Difference between revisions of "ASPARTATE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction DIHYDRODIPICSYN-RXN == * direction: ** left-to-right * common-name: ** 4-hydroxy-tetrahydrodipicolinate synthase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction ASPARTATE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** aspartate-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIHYDRODIPICSYN-RXN ==
+
== Reaction ASPARTATE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 4-hydroxy-tetrahydrodipicolinate synthase
+
** aspartate-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.3.3.7 ec-4.3.3.7]
+
** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12]
−
* synonymous:
 
−
** dihydrodipicolinic acid synthase
 
−
** dihydropicolinate synthetase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CPD-14443]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18863]]
+
* Gene: [[SJ22478]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ21231]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03188]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5097]], L-lysine biosynthesis VI:
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2941]], L-lysine biosynthesis II:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2942]], L-lysine biosynthesis III:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115727
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19650 19650]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10147 R10147]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P43797 P43797]
+
** [http://www.uniprot.org/uniprot/P56459 P56459]
−
** [http://www.uniprot.org/uniprot/O26892 O26892]
+
** [http://www.uniprot.org/uniprot/O26328 O26328]
−
** [http://www.uniprot.org/uniprot/Q9Z6K9 Q9Z6K9]
+
** [http://www.uniprot.org/uniprot/O83950 O83950]
−
** [http://www.uniprot.org/uniprot/Q9X1K9 Q9X1K9]
+
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
−
** [http://www.uniprot.org/uniprot/P19808 P19808]
+
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
−
** [http://www.uniprot.org/uniprot/Q9ZM13 Q9ZM13]
+
** [http://www.uniprot.org/uniprot/O32038 O32038]
−
** [http://www.uniprot.org/uniprot/O05969 O05969]
+
** [http://www.uniprot.org/uniprot/O67589 O67589]
−
** [http://www.uniprot.org/uniprot/Q9CF61 Q9CF61]
+
** [http://www.uniprot.org/uniprot/P43817 P43817]
−
** [http://www.uniprot.org/uniprot/Q04796 Q04796]
+
** [http://www.uniprot.org/uniprot/O51402 O51402]
−
** [http://www.uniprot.org/uniprot/Q57695 Q57695]
+
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
−
** [http://www.uniprot.org/uniprot/O25657 O25657]
+
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
−
** [http://www.uniprot.org/uniprot/O67216 O67216]
+
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
−
** [http://www.uniprot.org/uniprot/O29352 O29352]
+
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
−
** [http://www.uniprot.org/uniprot/O84366 O84366]
+
** [http://www.uniprot.org/uniprot/O58776 O58776]
−
** [http://www.uniprot.org/uniprot/Q9PPB4 Q9PPB4]
+
** [http://www.uniprot.org/uniprot/O84546 O84546]
−
** [http://www.uniprot.org/uniprot/P63945 P63945]
+
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
−
** [http://www.uniprot.org/uniprot/Q9JUU9 Q9JUU9]
+
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
−
** [http://www.uniprot.org/uniprot/Q9LZX6 Q9LZX6]
+
** [http://www.uniprot.org/uniprot/P47282 P47282]
−
** [http://www.uniprot.org/uniprot/Q43038 Q43038]
+
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
−
** [http://www.uniprot.org/uniprot/P49423 P49423]
+
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
−
** [http://www.uniprot.org/uniprot/Q55513 Q55513]
+
** [http://www.uniprot.org/uniprot/P36429 P36429]
−
** [http://www.uniprot.org/uniprot/P0A6L2 P0A6L2]
+
** [http://www.uniprot.org/uniprot/P75068 P75068]
−
** [http://www.uniprot.org/uniprot/Q42948 Q42948]
+
** [http://www.uniprot.org/uniprot/P73851 P73851]
−
** [http://www.uniprot.org/uniprot/Q42940 Q42940]
+
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
−
** [http://www.uniprot.org/uniprot/O86841 O86841]
+
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
−
** [http://www.uniprot.org/uniprot/P24847 P24847]
+
** [http://www.uniprot.org/uniprot/P04802 P04802]
−
** [http://www.uniprot.org/uniprot/P24846 P24846]
+
** [http://www.uniprot.org/uniprot/P15179 P15179]
 +
** [http://www.uniprot.org/uniprot/P21889 P21889]
 +
** [http://www.uniprot.org/uniprot/P14868 P14868]
 +
** [http://www.uniprot.org/uniprot/P15178 P15178]
 +
** [http://www.uniprot.org/uniprot/O81892 O81892]
 +
** [http://www.uniprot.org/uniprot/O74407 O74407]
 +
** [http://www.uniprot.org/uniprot/O07683 O07683]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=4-hydroxy-tetrahydrodipicolinate synthase}}
+
{{#set: common-name=aspartate-trna ligase}}
−
{{#set: ec-number=ec-4.3.3.7}}
+
{{#set: ec-number=ec-6.1.1.12}}
−
{{#set: synonymous=dihydrodipicolinic acid synthase|dihydropicolinate synthetase}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction ASPARTATE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • aspartate-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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