Difference between revisions of "ASPARTATE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 6PGLUCONDEHYDROG-RXN == * direction: ** left-to-right * common-name: ** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating] *...")
(Created page with "Category:reaction == Reaction ASPARTATE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** aspartate-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 6PGLUCONDEHYDROG-RXN ==
+
== Reaction ASPARTATE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
+
** aspartate-trna ligase
−
** phosphogluconate dehydrogenase (decarboxylating)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351]
+
** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12]
−
* synonymous:
 
−
** 6-phosphogluconic carboxylase
 
−
** phosphogluconic acid dehydrogenase
 
−
** 6pgd
 
−
** 6-phosphogluconic dehydrogenase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c]
+
* 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ22478]]
−
* Gene: [[SJ16180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15062]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11815]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14331]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11912]]
+
* Gene: [[SJ03188]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12698]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22264]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12699]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00878]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P122-PWY]], heterolactic fermentation:
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''16''' reactions found over '''18''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR115649
+
* METANETX-RXN : MNXR115727
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19650 19650]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P14332 P14332]
+
** [http://www.uniprot.org/uniprot/P56459 P56459]
−
** [http://www.uniprot.org/uniprot/P31072 P31072]
+
** [http://www.uniprot.org/uniprot/O26328 O26328]
−
** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
+
** [http://www.uniprot.org/uniprot/O83950 O83950]
−
** [http://www.uniprot.org/uniprot/P47506 P47506]
+
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
−
** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
+
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
−
** [http://www.uniprot.org/uniprot/P43774 P43774]
+
** [http://www.uniprot.org/uniprot/O32038 O32038]
−
** [http://www.uniprot.org/uniprot/P12013 P12013]
+
** [http://www.uniprot.org/uniprot/O67589 O67589]
−
** [http://www.uniprot.org/uniprot/P41576 P41576]
+
** [http://www.uniprot.org/uniprot/P43817 P43817]
−
** [http://www.uniprot.org/uniprot/P00350 P00350]
+
** [http://www.uniprot.org/uniprot/O51402 O51402]
−
** [http://www.uniprot.org/uniprot/P00349 P00349]
+
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
−
** [http://www.uniprot.org/uniprot/P52209 P52209]
+
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
−
** [http://www.uniprot.org/uniprot/P41581 P41581]
+
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
−
** [http://www.uniprot.org/uniprot/P41582 P41582]
+
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
−
** [http://www.uniprot.org/uniprot/Q59275 Q59275]
+
** [http://www.uniprot.org/uniprot/O58776 O58776]
−
** [http://www.uniprot.org/uniprot/P41583 P41583]
+
** [http://www.uniprot.org/uniprot/O84546 O84546]
−
** [http://www.uniprot.org/uniprot/Q60254 Q60254]
+
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
−
** [http://www.uniprot.org/uniprot/P37754 P37754]
+
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
−
** [http://www.uniprot.org/uniprot/Q59410 Q59410]
+
** [http://www.uniprot.org/uniprot/P47282 P47282]
−
** [http://www.uniprot.org/uniprot/P52207 P52207]
+
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
−
** [http://www.uniprot.org/uniprot/P70718 P70718]
+
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
−
** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
+
** [http://www.uniprot.org/uniprot/P36429 P36429]
−
** [http://www.uniprot.org/uniprot/P41572 P41572]
+
** [http://www.uniprot.org/uniprot/P75068 P75068]
−
** [http://www.uniprot.org/uniprot/P14062 P14062]
+
** [http://www.uniprot.org/uniprot/P73851 P73851]
−
** [http://www.uniprot.org/uniprot/P21577 P21577]
+
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
−
** [http://www.uniprot.org/uniprot/P38720 P38720]
+
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
−
** [http://www.uniprot.org/uniprot/Q40311 Q40311]
+
** [http://www.uniprot.org/uniprot/P04802 P04802]
−
** [http://www.uniprot.org/uniprot/P53319 P53319]
+
** [http://www.uniprot.org/uniprot/P15179 P15179]
−
** [http://www.uniprot.org/uniprot/O81237 O81237]
+
** [http://www.uniprot.org/uniprot/P21889 P21889]
−
** [http://www.uniprot.org/uniprot/O81238 O81238]
+
** [http://www.uniprot.org/uniprot/P14868 P14868]
−
** [http://www.uniprot.org/uniprot/O81239 O81239]
+
** [http://www.uniprot.org/uniprot/P15178 P15178]
−
** [http://www.uniprot.org/uniprot/O22111 O22111]
+
** [http://www.uniprot.org/uniprot/O81892 O81892]
−
** [http://www.uniprot.org/uniprot/Q17761 Q17761]
+
** [http://www.uniprot.org/uniprot/O74407 O74407]
−
** [http://www.uniprot.org/uniprot/O32911 O32911]
+
** [http://www.uniprot.org/uniprot/O07683 O07683]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]|phosphogluconate dehydrogenase (decarboxylating)}}
+
{{#set: common-name=aspartate-trna ligase}}
−
{{#set: ec-number=ec-1.1.1.351}}
+
{{#set: ec-number=ec-6.1.1.12}}
−
{{#set: synonymous=phosphogluconic acid dehydrogenase|6pgd|6-phosphogluconic carboxylase|6-phosphogluconic dehydrogenase}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=11}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction ASPARTATE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • aspartate-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ASPARTATE--TRNA-LIGASE-RXN&oldid=142923"