Difference between revisions of "ATAM"

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(Created page with "Category:reaction == Reaction RXN-11213 == * direction: ** left-to-right * common-name: ** methylmalonate-semialdehyde dehydrogenase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction RXN-9629 == * direction: ** left-to-right * common-name: ** palmitoyl-coa hydrolase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.2.2 ec-3...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-11213 ==
+
== Reaction RXN-9629 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** methylmalonate-semialdehyde dehydrogenase
+
** palmitoyl-coa hydrolase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.2.1.27 ec-1.2.1.27]
+
** [http://enzyme.expasy.org/EC/3.1.2.2 ec-3.1.2.2]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CH3-MALONATE-S-ALD]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[HCO3]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROPIONYL-COA]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-9965]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ARACHIDIC_ACID]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ17249]]
+
* Gene: [[SJ09703]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ00780]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[VALDEG-PWY]], L-valine degradation I:
 
** '''6''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R00935 R00935]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08175 R08175]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=methylmalonate-semialdehyde dehydrogenase}}
+
{{#set: common-name=palmitoyl-coa hydrolase}}
{{#set: ec-number=ec-1.2.1.27}}
+
{{#set: ec-number=ec-3.1.2.2}}
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:04, 14 January 2021

Reaction RXN-9629

  • direction:
    • left-to-right
  • common-name:
    • palmitoyl-coa hydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links