Difference between revisions of "ATCD"

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(Created page with "Category:reaction == Reaction RXN-15830 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.9.3.1 ec-1.9.3.1] == Reaction formula == * 4 Cyto...")
(Created page with "{{#ask: Category:reaction reconstruction category::manual | ?common-name | ?ec-number | ?reconstruction tool | ?reconstruction source | ?reconstruction comment | ?nb g...")
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction category::manual]]
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== Reaction RXN-15830 ==
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| ?common-name
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* direction:
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| ?ec-number
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** left-to-right
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| ?reconstruction tool
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* ec-number:
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| ?reconstruction source
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** [http://enzyme.expasy.org/EC/1.9.3.1 ec-1.9.3.1]
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| ?reconstruction comment
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== Reaction formula ==
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| ?nb gene associated
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* 4 [[Cytochromes-C-Reduced]][e] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 8 [[PROTON]][c] '''=>''' 4 [[Cytochromes-C-Oxidized]][e] '''+''' 4 [[PROTON]][e] '''+''' 2 [[WATER]][c]
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| ?nb pathway associated
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== Gene(s) associated with this reaction  ==
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}}
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* Gene: [[SJ06150]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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== Pathway(s)  ==
 
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* [[PWY-6692]], Fe(II) oxidation:
 
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** '''3''' reactions found over '''6''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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{{#set: direction=left-to-right}}
 
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{{#set: ec-number=ec-1.9.3.1}}
 
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 18:59, 14 January 2021

 Common-nameEc-numberReconstruction toolReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
1.1.1.288-RXNEc-1.1.1.288CurationPrevious menecoReaction added with meneco (previous version)01
1.2.3.14-RXNEc-1.2.3.14CurationPrevious menecoReaction added with meneco (previous version)01
1.3.3.12-RXNEc-1.3.3.12CurationPrevious menecoReaction added with meneco (previous version)00
ACECOATRANS-RXN-CPD-14717/ACET//R-2-HYDROXYSTEARATE/ACETYL-COA.47.CurationPrevious menecoReaction added with meneco (previous version)00
Biomass rxnCurationBiomass reactionForfba00
DIAMINOPIMELATE-DEHYDROGENASE-RXNEc-1.4.1.16CurationPrevious menecoReaction added with meneco (previous version)01
Exchange BIOMASSCurationBiomass reactionExchange biomass to boundary00
ExchangeSeed-ADENOSYLCOBALAMINCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-AMMONIACurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-BIOTINCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CA+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CARBON-DIOXIDECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CL-CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CO+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-COB-I-ALAMINCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-3CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-315CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-EDTACurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+3CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-K+CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-LightCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MG+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MN+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NA+CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NITRATECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-OXYGEN-MOLECULECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-PROTONCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-SULFATECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-THIAMINECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-WATERCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-ZN+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
MANNKIN-RXN-CPD-12601/ATP//MANNOSE-6P/ADP/PROTON.37.CurationPrevious menecoReaction added with meneco (previous version)00
MANNKIN-RXN-D-mannopyranose/ATP//MANNOSE-6P/ADP/PROTON.43.CurationPrevious menecoReaction added with meneco (previous version)00
RXN-11026-PALMITYL-COA/OXYGEN-MOLECULE//CPD0-2117/HYDROGEN-PEROXIDE.58.CurationPrevious menecoReaction added with meneco (previous version)00
RXN-11153L-galactono-1,4-lactone dehydrogenaseCurationPrevious menecoReaction added with meneco (previous version)01
RXN-11876Ec-5.5.1.9CurationReactions add sjapCuration sterols (girard et al.)11
RXN-11878Ec-1.3.1.70CurationReactions add sjapCuration sterols (girard et al.)11
RXN-118814α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol demethylase
4α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol 14-demethylase		Ec-1.14.13.70Pathwaytools
Pantograph
Curation		Saccharina japonica genome
Output pantograph ectocarpus siliculosus
Reactions add sjap		N.a
Curation sterols (girard et al.)		10
RXN-11887Ec-1.14.19.20CurationReactions add sjapCuration sterols (girard et al.)12
RXN-13431Ec-2.3.1CurationPrevious menecoReaction added with meneco (previous version)01
RXN-137094-methylsterol monooxygenaseEc-1.14.18.9Meneco
Curation		Gapfilling solution with meneco draft medium
Reactions add sjap		Added for gapfilling
Curation sterols (girard et al.)		00
RXN-19200Ec-1.23.5CurationSjapTransformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)01
RXN-19202Ec-1.14.13CurationSjapTransformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)11
RXN-21829Ec-1.14.18.10CurationReactions add sjapCuration sterols (girard et al.)00
RXN-21830Ec-1.1.1.418CurationReactions add sjapCuration sterols (girard et al.)01
RXN-21831Ec-1.1.1.270CurationReactions add sjapCuration sterols (girard et al.)01
RXN-21833CurationReaction creator sjapCuration sterols (girard et al.)01
... further results
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