Difference between revisions of "ATCD"

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(Created page with "Category:reaction == Reaction 1.14.11.2-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.2 ec-1.14.11.2] == Reaction formula == *...")
(Created page with "{{#ask: Category:pathway | ?common-name | ?nb reaction found | ?nb total reaction | ?completion rate |sort=completion rate, nb total reaction |order=descending }}")
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[[Category:reaction]]
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{{#ask: [[Category:pathway]]
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== Reaction 1.14.11.2-RXN ==
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| ?common-name
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* direction:
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| ?nb reaction found
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** left-to-right
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| ?nb total reaction
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* ec-number:
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| ?completion rate
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** [http://enzyme.expasy.org/EC/1.14.11.2 ec-1.14.11.2]
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|sort=completion rate, nb total reaction
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== Reaction formula ==
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|order=descending
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROCOLLAGEN-L-PROLINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6321]][c] '''+''' 1 [[SUC]][c]
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}}
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== Gene(s) associated with this reaction  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[SJ21060]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ17856]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ10762]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ09957]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ20526]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ19825]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ20946]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ08884]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ02727]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ12047]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ13016]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ16355]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ14373]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ20511]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ19764]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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</div>
 
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== Pathway(s)  ==
 
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* [[PWY-7894]], procollagen hydroxylation and glycosylation:
 
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** '''1''' reactions found over '''6''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18946 18946]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03219 R03219]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P21195 P21195]
 
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** [http://www.uniprot.org/uniprot/Q10576 Q10576]
 
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** [http://www.uniprot.org/uniprot/P16924 P16924]
 
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** [http://www.uniprot.org/uniprot/P13674 P13674]
 
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** [http://www.uniprot.org/uniprot/P05307 P05307]
 
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** [http://www.uniprot.org/uniprot/P09102 P09102]
 
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** [http://www.uniprot.org/uniprot/P07237 P07237]
 
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** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
 
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** [http://www.uniprot.org/uniprot/P04785 P04785]
 
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** [http://www.uniprot.org/uniprot/P54001 P54001]
 
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{{#set: direction=left-to-right}}
 
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{{#set: ec-number=ec-1.14.11.2}}
 
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{{#set: nb gene associated=15}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 08:32, 15 March 2021

 Common-nameNb reaction foundNb total reactionCompletion rate
PWY-7233Ubiquinol-6 bypass biosynthesis (eukaryotic)3N.aN.a
PWY-7243Pectin degradation i1N.aN.a
PWY-7235Superpathway of ubiquinol-6 biosynthesis (eukaryotic)2N.aN.a
PWY-6115Avenacin biosynthesis, initial reactions1N.aN.a
PWY-6196D-serine metabolism1N.aN.a
PWY0-661Prpp biosynthesis ii1N.aN.a
PWY-6305Putrescine biosynthesis iv4N.aN.a
PWY0-1534Hydrogen sulfide biosynthesis i1N.aN.a
P224-PWYSulfate reduction v (dissimilatory, to thiosulfate)2N.aN.a
PWY-82382N.aN.a
PWY-5965Fatty acid biosynthesis initiation iii1N.aN.a
PWY0-1415Superpathway of heme b biosynthesis from uroporphyrinogen-iii4N.aN.a
PWY-5966Fatty acid biosynthesis initiation ii2N.aN.a
PWY-3221Dtdp-l-rhamnose biosynthesis ii1N.aN.a
PWY66-422D-galactose degradation v (leloir pathway)5N.aN.a
PWY-5664Erythro-tetrahydrobiopterin biosynthesis ii2N.aN.a
PWY66-4Cholesterol biosynthesis iii (via desmosterol)1243.0
PWY-7432L-phenylalanine biosynthesis iii (cytosolic, plants)321.5
PWY-4981L-proline biosynthesis ii (from arginine)321.5
PWY-5750Itaconate biosynthesis321.5
PWY-3341L-proline biosynthesis iii431.33
PWY-7219Adenosine ribonucleotides de novo biosynthesis431.33
PWY-7118Chitin degradation to ethanol541.25
PWY-5913Partial tca cycle (obligate autotrophs)1081.25
PWY-882L-ascorbate biosynthesis i (l-galactose pathway)651.2
PWY-6163Chorismate biosynthesis from 3-dehydroquinate651.2
PWY-6823Molybdenum cofactor biosynthesis761.17
PWY-6969Tca cycle v (2-oxoglutarate:ferredoxin oxidoreductase)1091.11
P105-PWYTca cycle iv (2-oxoglutarate decarboxylase)1091.11
GLUCONSUPER-PWYD-gluconate degradation111.0
PWY-5143Long-chain fatty acid activation111.0
PWY-58864-hydroxyphenylpyruvate biosynthesis111.0
GLUTSYNIII-PWYL-glutamate biosynthesis iii111.0
GLYSYN-ALA-PWYGlycine biosynthesis iii111.0
BGALACT-PWYLactose degradation iii111.0
GLYCOLYSIS-TCA-GLYOX-BYPASSSuperpathway of glycolysis, pyruvate dehydrogenase, tca, and glyoxylate bypass111.0
PWY-5704Urea degradation ii111.0
OCTOPINEDEG-PWYOctopine degradation111.0
PWY-4341L-glutamate biosynthesis v111.0
PWY-7346Udp-α-d-glucuronate biosynthesis (from udp-glucose)111.0
GLYSYN-THR-PWYGlycine biosynthesis iv111.0
PWY-5490Paraoxon degradation111.0
PWY-6173Histamine biosynthesis111.0
PWY-7344Udp-α-d-galactose biosynthesis111.0
PHENYLALANINE-DEG1-PWYL-phenylalanine degradation i (aerobic)111.0
PWY3O-246(r,r)-butanediol degradation111.0
PWY-6012-1Acyl carrier protein activation111.0
PWY-4861Udp-α-d-galacturonate biosynthesis i (from udp-d-glucuronate)111.0
PWY-6745Phytochelatins biosynthesis111.0
ASPARAGINE-BIOSYNTHESISL-asparagine biosynthesis i111.0
... further results
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