Difference between revisions of "ATCD"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NICOTINATEPRIBOSYLTRANS-RXN NICOTINATEPRIBOSYLTRANS-RXN] == * direction: ** left-to-right * common-...")
(Created page with "{{#ask: Category:reaction reconstruction tool::meneco | ?common-name | ?ec-number | ?reconstruction category | ?reconstruction source | ?reconstruction comment | ?nb g...")
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction tool::meneco]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NICOTINATEPRIBOSYLTRANS-RXN NICOTINATEPRIBOSYLTRANS-RXN] ==
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| ?common-name
* direction:
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| ?ec-number
** left-to-right
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| ?reconstruction category
* common-name:
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| ?reconstruction source
** nicotinate phosphoribosyltransferase
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| ?reconstruction comment
* ec-number:
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| ?nb gene associated
** [http://enzyme.expasy.org/EC/6.3.4.21 ec-6.3.4.21]
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| ?nb pathway associated
== Reaction formula ==
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}}
* 1 [[ATP]][c] '''+''' 1 [[NIACINE]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
* Gene: [[SJ04451]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
* [[PYRIDNUCSAL-PWY]], NAD salvage pathway I (PNC VI cycle): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSAL-PWY PYRIDNUCSAL-PWY]
 
** '''4''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
 
** '''6''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13393 13393]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01724 R01724]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P22253 P22253]
 
** [http://www.uniprot.org/uniprot/P18133 P18133]
 
** [http://www.uniprot.org/uniprot/P39683 P39683]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=nicotinate phosphoribosyltransferase}}
 
{{#set: ec-number=ec-6.3.4.21}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}}
 

Revision as of 20:38, 18 December 2020

 Common-nameEc-numberReconstruction categoryReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
1.5.99.12-RXNEc-1.5.99.12Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
2-ACYLGLYCEROL-O-ACYLTRANSFERASE-RXN-CPD66-43/STEAROYL-COA//CPD-17271/CO-A.38.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
2.1.1.143-RXNEc-2.1.1.143Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
3.1.2.19-RXN-CPD-196/WATER//CPD-195/CO-A/PROTON.35.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.2.19-RXN-HEXANOYL-COA/WATER//HEXANOATE/CO-A/PROTON.42.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.4.14-RXNEc-3.1.4.14Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
ACECOATRANS-RXN-CPD-10280/ACET//TETRACOSANOATE/ACETYL-COA.42.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-CPD-196/ACET//CPD-195/ACETYL-COA.33.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-HEXANOYL-COA/ACET//HEXANOATE/ACETYL-COA.40.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACETOLACTSYN-RXNEc-2.2.1.6Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling05
ADENYLYLSULFATE-REDUCTASE-RXNEc-1.8.99.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling04
ALGINATE-SYNTHASE-RXNEc-2.4.1.33Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
CYSPH-RXNEc-2.5.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
CYSTATHIONASE-RXNGap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
DIAMINOPIMEPIM-RXNEc-5.1.1.7Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling03
FATTY-ACID-PEROXIDASE-RXNEc-1.11.1.3Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
FESO3OXI-RXNGap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
GLUCISOM-RXNGlucose isomeraseEc-5.3.1.5Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-ALPHA-GLUCOSE//CPD-15382.25.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-GLC//CPD-15382.15.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
HISTIDPHOS-RXNEc-3.1.3.15Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
HOMOSERINE-O-ACETYLTRANSFERASE-RXNEc-2.3.1.31Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMSUCTRAN-RXNEc-2.3.1.46Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
LINOLEOYL-RXNEc-3.1.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
MANNITOL-1-PHOSPHATASE-RXNEc-3.1.3.22Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
MANNPISOM-RXN-MANNOSE-6P//FRUCTOSE-6P.24.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSMANMUT-RXN-MANNOSE-1P//MANNOSE-6P.23.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSPHATIDATE-PHOSPHATASE-RXN-CPD0-1422/WATER//CPD66-34/Pi.29.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10662Ec-3.1.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10727Myristoyl-acp hydrolase activityEc-3.1.2.14Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11797(r)-3-hydroxydecanoyl-coa synthaseEc-2.4.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-11820-STEARIC ACID/HYDROGEN-PEROXIDE//R-2-HYDROXYSTEARATE/WATER.58.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11976Torulene synthaseEc-2.5.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12559Trans-2-hexenoyl-coa reductase (nad+)Ec-1.3.1.44Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12777Ec-2.3.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-12971Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13307Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-13308Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-137094-methylsterol monooxygenaseEc-1.14.18.9Manual
Gap-filling
Gapfilling solution with meneco draft medium
Reactions add sjap
Added for gapfilling
Curation sterols (girard et al.)
00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4702/NAD/WATER.76.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4702/NADP/WATER.78.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712Ec-1.14.18.9Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4577/NAD/WATER.79.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4577/NADP/WATER.81.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14037Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14246Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14275Ec-1.1.1.m19Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
... further results