Difference between revisions of "ATCDm"

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(Created page with "Category:reaction == Reaction RXN-2962 == * direction: ** left-to-right * common-name: ** formaldehyde dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.284...")
(Created page with "Category:reaction == Reaction RXN0-5298 == * direction: ** reversible * common-name: ** l-fucose mutarotase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.29 ec-5.1.3....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-2962 ==
+
== Reaction RXN0-5298 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** formaldehyde dehydrogenase
+
** l-fucose mutarotase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.284 ec-1.1.1.284]
+
** [http://enzyme.expasy.org/EC/5.1.3.29 ec-5.1.3.29]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[S-HYDROXYMETHYLGLUTATHIONE]][c] '''=>''' 1 [[CPD-548]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-10329]][c] '''<=>''' 1 [[CPD0-1107]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21601]]
+
* Gene: [[SJ22327]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 16: Line 16:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-1801]], formaldehyde oxidation II (glutathione-dependent):
+
* [[FUCCAT-PWY]], fucose degradation:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* RHEA:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07140 R07140]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25583 25583]
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=formaldehyde dehydrogenase}}
+
{{#set: common-name=l-fucose mutarotase}}
−
{{#set: ec-number=ec-1.1.1.284}}
+
{{#set: ec-number=ec-5.1.3.29}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:06, 5 January 2021

Reaction RXN0-5298

  • direction:
    • reversible
  • common-name:
    • l-fucose mutarotase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • FUCCAT-PWY, fucose degradation:
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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