Difference between revisions of "ATDCDm"

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(Created page with "Category:reaction == Reaction SERINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** l-serine:trnaser ligase (amp-forming) * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction ENOYL-COA-HYDRAT-RXN == * direction: ** left-to-right * common-name: ** enoyl-coa hydratase * ec-number: ** [http://enzyme.expasy.org/EC/4.2....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SERINE--TRNA-LIGASE-RXN ==
+
== Reaction ENOYL-COA-HYDRAT-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-serine:trnaser ligase (amp-forming)
+
** enoyl-coa hydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
+
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[SER-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[TRANS-D2-ENOYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[L-3-HYDROXYACYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14143]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ10275]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03584]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21390]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03913]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07311]]
+
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-5138]], fatty acid &beta;-oxidation IV (unsaturated, even number):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5136]], fatty acid &beta;-oxidation II (plant peroxisome):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-391]], fatty acid &beta;-oxidation VI (mammalian peroxisome):
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7007]], methyl ketone biosynthesis (engineered):
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 29: Line 53:
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12293 12293]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16107 16107]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02685 R02685]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T17476 T17476]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S72706 S72706]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41006 S41006]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S06477 S06477]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40678 I40678]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I37195 I37195]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69985 G69985]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E70893 E70893]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D70893 D70893]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D64890 D64890]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71435 C71435]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69893 C69893]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69370 C69370]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69304 C69304]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
+
** [http://www.uniprot.org/uniprot/P21177 P21177]
−
** [http://www.uniprot.org/uniprot/O51244 O51244]
+
** [http://www.uniprot.org/uniprot/Q08426 Q08426]
−
** [http://www.uniprot.org/uniprot/O66647 O66647]
+
** [http://www.uniprot.org/uniprot/O29814 O29814]
−
** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
+
** [http://www.uniprot.org/uniprot/O29299 O29299]
−
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
+
** [http://www.uniprot.org/uniprot/O34893 O34893]
−
** [http://www.uniprot.org/uniprot/O27194 O27194]
+
** [http://www.uniprot.org/uniprot/O23520 O23520]
−
** [http://www.uniprot.org/uniprot/O84734 O84734]
+
** [http://www.uniprot.org/uniprot/P76082 P76082]
−
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
+
** [http://www.uniprot.org/uniprot/P64016 P64016]
−
** [http://www.uniprot.org/uniprot/P47251 P47251]
+
** [http://www.uniprot.org/uniprot/P07896 P07896]
−
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
+
** [http://www.uniprot.org/uniprot/O53419 O53419]
−
** [http://www.uniprot.org/uniprot/O83653 O83653]
+
** [http://www.uniprot.org/uniprot/P94549 P94549]
−
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
+
** [http://www.uniprot.org/uniprot/Q13825 Q13825]
−
** [http://www.uniprot.org/uniprot/P49591 P49591]
+
** [http://www.uniprot.org/uniprot/P45361 P45361]
−
** [http://www.uniprot.org/uniprot/P56458 P56458]
+
** [http://www.uniprot.org/uniprot/P28793 P28793]
−
** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
+
** [http://www.uniprot.org/uniprot/P14604 P14604]
−
** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
+
** [http://www.uniprot.org/uniprot/P22414 P22414]
−
** [http://www.uniprot.org/uniprot/P43833 P43833]
+
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
−
** [http://www.uniprot.org/uniprot/P26636 P26636]
+
** [http://www.uniprot.org/uniprot/P34559 P34559]
−
** [http://www.uniprot.org/uniprot/P39919 P39919]
+
** [http://www.uniprot.org/uniprot/Q01373 Q01373]
−
** [http://www.uniprot.org/uniprot/P37464 P37464]
+
** [http://www.uniprot.org/uniprot/P55100 P55100]
−
** [http://www.uniprot.org/uniprot/Q39230 Q39230]
+
** [http://www.uniprot.org/uniprot/P53526 P53526]
−
** [http://www.uniprot.org/uniprot/P75107 P75107]
+
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
−
** [http://www.uniprot.org/uniprot/P73201 P73201]
+
** [http://www.uniprot.org/uniprot/O52797 O52797]
−
** [http://www.uniprot.org/uniprot/O82108 O82108]
 
−
** [http://www.uniprot.org/uniprot/O82110 O82110]
 
−
** [http://www.uniprot.org/uniprot/O81983 O81983]
 
−
** [http://www.uniprot.org/uniprot/O45887 O45887]
 
−
** [http://www.uniprot.org/uniprot/O14018 O14018]
 
−
** [http://www.uniprot.org/uniprot/P54221 P54221]
 
−
** [http://www.uniprot.org/uniprot/P07284 P07284]
 
−
** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-serine:trnaser ligase (amp-forming)}}
+
{{#set: common-name=enoyl-coa hydratase}}
−
{{#set: ec-number=ec-6.1.1.11}}
+
{{#set: ec-number=ec-4.2.1.17}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:33, 5 January 2021

Reaction ENOYL-COA-HYDRAT-RXN

  • direction:
    • left-to-right
  • common-name:
    • enoyl-coa hydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5138, fatty acid β-oxidation IV (unsaturated, even number):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5136, fatty acid β-oxidation II (plant peroxisome):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (mammalian peroxisome):
    • 6 reactions found over 7 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I (generic):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7007, methyl ketone biosynthesis (engineered):
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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