Difference between revisions of "ATDGD"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6430 PWY-6430] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-300275 tax-...")
(Created page with "Category:reaction == Reaction RXN-7682 == * direction: ** left-to-right * common-name: ** hypoxanthine hydroxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.17.1.4 ec...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6430 PWY-6430] ==
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== Reaction RXN-7682 ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-300275 tax-300275]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-40674 tax-40674]
 
 
* common-name:
 
* common-name:
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** thymine degradation
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** hypoxanthine hydroxylase
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== Reaction(s) found ==
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* ec-number:
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* [[RXN-11210]]
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** [http://enzyme.expasy.org/EC/1.17.1.4 ec-1.17.1.4]
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== Reaction(s) not found ==
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11211 RXN-11211]
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* 1 [[HYPOXANTHINE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[XANTHINE]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11209 RXN-11209]
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== Gene(s) associated with this reaction  ==
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{{#set: taxonomic-range=tax-40674|tax-2|tax-33090|tax-300275}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=thymine degradation}}
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* Gene: [[SJ05673]]
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{{#set: nb reaction found=1}}
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** Category: [[annotation]]
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{{#set: completion rate=0.33}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb total reaction=3}}
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* Gene: [[SJ05668]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ13098]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ13101]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ05674]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ13100]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ13095]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ05660]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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</div>
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== Pathway(s) ==
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* [[PWY-6596]], adenosine nucleotides degradation I:
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** '''7''' reactions found over '''8''' reactions in the full pathway
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* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
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** '''6''' reactions found over '''17''' reactions in the full pathway
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* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24671 24671]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01768 R01768]
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{{#set: direction=left-to-right}}
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{{#set: common-name=hypoxanthine hydroxylase}}
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{{#set: ec-number=ec-1.17.1.4}}
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{{#set: nb gene associated=8}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:44, 18 December 2020

Reaction RXN-7682

  • direction:
    • left-to-right
  • common-name:
    • hypoxanthine hydroxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6596, adenosine nucleotides degradation I:
    • 7 reactions found over 8 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic):
    • 6 reactions found over 17 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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