Difference between revisions of "ATDGD"

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(Created page with "Category:reaction == Reaction RXN-7682 == * direction: ** left-to-right * common-name: ** hypoxanthine hydroxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.17.1.4 ec...")
(Created page with "Category:reaction == Reaction INDOLE-23-DIOXYGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.13.11.17 ec-1.13.11.17] == Reaction...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-7682 ==
+
== Reaction INDOLE-23-DIOXYGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** hypoxanthine hydroxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.1.4 ec-1.17.1.4]
+
** [http://enzyme.expasy.org/EC/1.13.11.17 ec-1.13.11.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HYPOXANTHINE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[XANTHINE]][c]
+
* 1 [[INDOLE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-248]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ12575]]
−
* Gene: [[SJ05673]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05668]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13098]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13101]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05674]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13100]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13095]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05660]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6596]], adenosine nucleotides degradation I:
+
* [[PWY-7430]], indole degradation to anthranil and anthranilate:
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 
−
** '''6''' reactions found over '''17''' reactions in the full pathway
 
−
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24671 24671]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11212 11212]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01768 R01768]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02338 R02338]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=hypoxanthine hydroxylase}}
+
{{#set: ec-number=ec-1.13.11.17}}
−
{{#set: ec-number=ec-1.17.1.4}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:05, 5 January 2021

Reaction INDOLE-23-DIOXYGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7430, indole degradation to anthranil and anthranilate:
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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