Difference between revisions of "ATDGD"
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(Created page with "Category:reaction == Reaction INDOLE-23-DIOXYGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.13.11.17 ec-1.13.11.17] == Reaction...") |
(Created page with "Category:reaction == Reaction RXN-10039 == * direction: ** left-to-right * common-name: ** selenocysteine synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.9.1.2 ec-...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RXN-10039 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** selenocysteine synthase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.9.1.2 ec-2.9.1.2] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[O-phospho-L-seryl-tRNASecs]][c] '''+''' 1 [[SEPO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Charged-SEC-tRNAs]][c] '''+''' 2 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ07198]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY- | + | * [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): |
| − | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25042 25042] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R08224 R08224] |
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: ec-number=ec- | + | {{#set: common-name=selenocysteine synthase}} |
| + | {{#set: ec-number=ec-2.9.1.2}} | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
| − | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=annotation|orthology}} |
| − | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:36, 5 January 2021
Contents
Reaction RXN-10039
- direction:
- left-to-right
- common-name:
- selenocysteine synthase
- ec-number:
Reaction formula
- 1 O-phospho-L-seryl-tRNASecs[c] + 1 SEPO3[c] + 1 WATER[c] => 1 Charged-SEC-tRNAs[c] + 2 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ07198
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes):
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
