Difference between revisions of "ATDUD"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] == * direction: ** left-to-right * common-name: ** orotidine-5'-ph...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHA-AMYL-RXN ALPHA-AMYL-RXN] == * direction: ** left-to-right * common-name: ** alpha-amylase * e...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHA-AMYL-RXN ALPHA-AMYL-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** orotidine-5'-phosphate decarboxylase
+
** alpha-amylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.23 ec-4.1.1.23]
+
** [http://enzyme.expasy.org/EC/3.2.1.1 ec-3.2.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c]
+
* 1 [[1-4-alpha-D-Glucan]][c] '''+''' n [[WATER]][c] '''=>''' n [[1-4-alpha-D-Glucan]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02816]]
+
* Gene: [[SJ00547]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02815]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11597 11597]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P11172 P11172]
 
−
** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
 
−
** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
 
−
** [http://www.uniprot.org/uniprot/P24220 P24220]
 
−
** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
 
−
** [http://www.uniprot.org/uniprot/P43812 P43812]
 
−
** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
 
−
** [http://www.uniprot.org/uniprot/P10652 P10652]
 
−
** [http://www.uniprot.org/uniprot/P07817 P07817]
 
−
** [http://www.uniprot.org/uniprot/P03962 P03962]
 
−
** [http://www.uniprot.org/uniprot/P14017 P14017]
 
−
** [http://www.uniprot.org/uniprot/P07691 P07691]
 
−
** [http://www.uniprot.org/uniprot/P08244 P08244]
 
−
** [http://www.uniprot.org/uniprot/P13439 P13439]
 
−
** [http://www.uniprot.org/uniprot/P05035 P05035]
 
−
** [http://www.uniprot.org/uniprot/P09463 P09463]
 
−
** [http://www.uniprot.org/uniprot/P14964 P14964]
 
−
** [http://www.uniprot.org/uniprot/P21593 P21593]
 
−
** [http://www.uniprot.org/uniprot/P15188 P15188]
 
−
** [http://www.uniprot.org/uniprot/P07922 P07922]
 
−
** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
 
−
** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
 
−
** [http://www.uniprot.org/uniprot/P25971 P25971]
 
−
** [http://www.uniprot.org/uniprot/P46535 P46535]
 
−
** [http://www.uniprot.org/uniprot/P31754 P31754]
 
−
** [http://www.uniprot.org/uniprot/P32430 P32430]
 
−
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 
−
** [http://www.uniprot.org/uniprot/P09556 P09556]
 
−
** [http://www.uniprot.org/uniprot/P21594 P21594]
 
−
** [http://www.uniprot.org/uniprot/Q06375 Q06375]
 
−
** [http://www.uniprot.org/uniprot/P41769 P41769]
 
−
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 
−
** [http://www.uniprot.org/uniprot/Q59654 Q59654]
 
−
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 
−
** [http://www.uniprot.org/uniprot/P48844 P48844]
 
−
** [http://www.uniprot.org/uniprot/P43230 P43230]
 
−
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 
−
** [http://www.uniprot.org/uniprot/O74110 O74110]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=orotidine-5'-phosphate decarboxylase}}
+
{{#set: common-name=alpha-amylase}}
−
{{#set: ec-number=ec-4.1.1.23}}
+
{{#set: ec-number=ec-3.2.1.1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction ALPHA-AMYL-RXN

  • direction:
    • left-to-right
  • common-name:
    • alpha-amylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ATDUD&oldid=36476"