Difference between revisions of "ATDUD"

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(Created page with "Category:reaction == Reaction RXN490-3641 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.57 ec-1.14.11.57] * synonymous: ** proline...")
(Created page with "Category:reaction == Reaction RXN-701 == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.8.1 ec-1.8.1] == Reaction formula == * 1 NADPH[c] ''...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN490-3641 ==
+
== Reaction RXN-701 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.11.57 ec-1.14.11.57]
+
** [http://enzyme.expasy.org/EC/1.8.1 ec-1.8.1]
−
* synonymous:
 
−
** proline hydroxylase
 
−
** proline,2-oxoglutarate 4-dioxygenase
 
−
** prolyl 4-hydroxylase
 
−
** prolyl hydroxylase
 
−
** protocollagen hydroxylase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[4-HYDROXY-L-PROLINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[PAPS]][c] '''<=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SO3]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10762]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ20526]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20511]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=51509 51509]
+
{{#set: ec-number=ec-1.8.1}}
−
* LIGAND-RXN:
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{{#set: nb gene associated=0}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: ec-number=ec-1.14.11.57}}
 
−
{{#set: synonymous=proline,2-oxoglutarate 4-dioxygenase|proline hydroxylase|prolyl 4-hydroxylase|prolyl hydroxylase|protocollagen hydroxylase}}
 
−
{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 15:32, 5 January 2021

Reaction RXN-701

  • direction:
    • reversible
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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