Difference between revisions of "ATGD"

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(Created page with "Category:reaction == Reaction 2.4.1.67-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.67 ec-2.4.1.67] == Reaction formula == * 1 CP...")
(Created page with "Category:reaction == Reaction PHOSPHAGLYPSYN-RXN == * direction: ** left-to-right * common-name: ** cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase * ec-...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.4.1.67-RXN ==
+
== Reaction PHOSPHAGLYPSYN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.1.67 ec-2.4.1.67]
+
** [http://enzyme.expasy.org/EC/2.7.8.5 ec-2.7.8.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-1099]][c] '''+''' 1 [[CPD-458]][c] '''<=>''' 1 [[CPD-170]][c] '''+''' 1 [[MYO-INOSITOL]][c]
+
* 1 [[CDPDIACYLGLYCEROL]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05258]]
+
* Gene: [[SJ08733]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02145]]
 
−
** Category: [[orthology]]
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5337]], stachyose biosynthesis:
+
* [[PWY-5269]], cardiolipin biosynthesis II:
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-1545]], cardiolipin biosynthesis III:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5668]], cardiolipin biosynthesis I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic):
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic):
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus):
 +
** '''6''' reactions found over '''16''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR107179
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20779 20779]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12593 12593]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03418 R03418]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01801 R01801]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: ec-number=ec-2.4.1.67}}
+
** [http://www.uniprot.org/uniprot/Q9JTH1 Q9JTH1]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/P46322 P46322]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P44528 P44528]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P47360 P47360]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/Q9PNM7 Q9PNM7]
 +
** [http://www.uniprot.org/uniprot/O25660 O25660]
 +
** [http://www.uniprot.org/uniprot/O51663 O51663]
 +
** [http://www.uniprot.org/uniprot/O67908 O67908]
 +
** [http://www.uniprot.org/uniprot/Q49839 Q49839]
 +
** [http://www.uniprot.org/uniprot/P75520 P75520]
 +
** [http://www.uniprot.org/uniprot/P74372 P74372]
 +
** [http://www.uniprot.org/uniprot/Q48959 Q48959]
 +
** [http://www.uniprot.org/uniprot/P0ABF8 P0ABF8]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase}}
 +
{{#set: ec-number=ec-2.7.8.5}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=6}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:36, 15 March 2021

Reaction PHOSPHAGLYPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5269, cardiolipin biosynthesis II:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY0-1545, cardiolipin biosynthesis III:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5668, cardiolipin biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY4FS-8, phosphatidylglycerol biosynthesis II (non-plastidic):
    • 3 reactions found over 2 reactions in the full pathway
  • PWY4FS-7, phosphatidylglycerol biosynthesis I (plastidic):
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-7817, type I lipoteichoic acid biosynthesis (S. aureus):
    • 6 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





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