Difference between revisions of "ATGD"

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(Created page with "Category:reaction == Reaction PHOSPHAGLYPSYN-RXN == * direction: ** left-to-right * common-name: ** cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase * ec-...")
(Created page with "Category:reaction == Reaction ATGD == * direction: ** left-to-right * common-name: ** atp:gdp phosphotransferase == Reaction formula == * 1.0 ATP[c] '''+''' 1.0 [[GDP]...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHOSPHAGLYPSYN-RXN ==
+
== Reaction ATGD ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
+
** atp:gdp phosphotransferase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.7.8.5 ec-2.7.8.5]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CDPDIACYLGLYCEROL]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[ATP]][c] '''+''' 1.0 [[GDP]][c] '''=>''' 1.0 [[ADP]][c] '''+''' 1.0 [[GTP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08733]]
+
* Gene: [[SJ10125]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5269]], cardiolipin biosynthesis II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY0-1545]], cardiolipin biosynthesis III:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5668]], cardiolipin biosynthesis I:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic):
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic):
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus):
 
−
** '''6''' reactions found over '''16''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR107179
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12593 12593]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01801 R01801]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9JTH1 Q9JTH1]
 
−
** [http://www.uniprot.org/uniprot/P46322 P46322]
 
−
** [http://www.uniprot.org/uniprot/P44528 P44528]
 
−
** [http://www.uniprot.org/uniprot/P47360 P47360]
 
−
** [http://www.uniprot.org/uniprot/Q9PNM7 Q9PNM7]
 
−
** [http://www.uniprot.org/uniprot/O25660 O25660]
 
−
** [http://www.uniprot.org/uniprot/O51663 O51663]
 
−
** [http://www.uniprot.org/uniprot/O67908 O67908]
 
−
** [http://www.uniprot.org/uniprot/Q49839 Q49839]
 
−
** [http://www.uniprot.org/uniprot/P75520 P75520]
 
−
** [http://www.uniprot.org/uniprot/P74372 P74372]
 
−
** [http://www.uniprot.org/uniprot/Q48959 Q48959]
 
−
** [http://www.uniprot.org/uniprot/P0ABF8 P0ABF8]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase}}
+
{{#set: common-name=atp:gdp phosphotransferase}}
−
{{#set: ec-number=ec-2.7.8.5}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:22, 18 March 2021

Reaction ATGD

  • direction:
    • left-to-right
  • common-name:
    • atp:gdp phosphotransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ATGD&oldid=141773"