Difference between revisions of "ATP-DEAMINASE-RXN"

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(Created page with "Category:reaction == Reaction 3.1.4.17-RXN == * direction: ** left-to-right * common-name: ** 3',5'-cyclic-nucleotide phosphodiesterase * ec-number: ** [http://enzyme.expa...")
(Created page with "Category:reaction == Reaction 3.1.4.14-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.1.4.14 ec-3.1.4.14] == Reaction formula == * 1 [...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.4.17-RXN ==
+
== Reaction 3.1.4.14-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 3',5'-cyclic-nucleotide phosphodiesterase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.4.17 ec-3.1.4.17]
+
** [http://enzyme.expasy.org/EC/3.1.4.14 ec-3.1.4.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Cyclic-3-5-Nucleoside-Monophosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Nucleoside-Monophosphates]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ACP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PANTETHEINE-P]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[apo-ACP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[SJ04705]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18680]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14703]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03999]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18679]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09726]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ14526]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10845]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6012]], acyl carrier protein metabolism:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14654 14654]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20538 20538]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03259 R03259]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01623 R01623]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P12019 P12019]
+
** [http://www.uniprot.org/uniprot/P43013 P43013]
−
** [http://www.uniprot.org/uniprot/Q56686 Q56686]
+
** [http://www.uniprot.org/uniprot/P41407 P41407]
−
** [http://www.uniprot.org/uniprot/P14099 P14099]
 
−
** [http://www.uniprot.org/uniprot/Q01066 Q01066]
 
−
** [http://www.uniprot.org/uniprot/Q01061 Q01061]
 
−
** [http://www.uniprot.org/uniprot/P14100 P14100]
 
−
** [http://www.uniprot.org/uniprot/Q01065 Q01065]
 
−
** [http://www.uniprot.org/uniprot/P27815 P27815]
 
−
** [http://www.uniprot.org/uniprot/O66909 O66909]
 
−
** [http://www.uniprot.org/uniprot/P14270 P14270]
 
−
** [http://www.uniprot.org/uniprot/O27755 O27755]
 
−
** [http://www.uniprot.org/uniprot/P44685 P44685]
 
−
** [http://www.uniprot.org/uniprot/P22434 P22434]
 
−
** [http://www.uniprot.org/uniprot/P0AEW4 P0AEW4]
 
−
** [http://www.uniprot.org/uniprot/O26280 O26280]
 
−
** [http://www.uniprot.org/uniprot/O06629 O06629]
 
−
** [http://www.uniprot.org/uniprot/O30241 O30241]
 
−
** [http://www.uniprot.org/uniprot/P14644 P14644]
 
−
** [http://www.uniprot.org/uniprot/P54748 P54748]
 
−
** [http://www.uniprot.org/uniprot/Q13945 Q13945]
 
−
** [http://www.uniprot.org/uniprot/Q01062 Q01062]
 
−
** [http://www.uniprot.org/uniprot/P54827 P54827]
 
−
** [http://www.uniprot.org/uniprot/Q01064 Q01064]
 
−
** [http://www.uniprot.org/uniprot/Q9NP56 Q9NP56]
 
−
** [http://www.uniprot.org/uniprot/O60658 O60658]
 
−
** [http://www.uniprot.org/uniprot/P36599 P36599]
 
−
** [http://www.uniprot.org/uniprot/P30645 P30645]
 
−
** [http://www.uniprot.org/uniprot/Q45859 Q45859]
 
−
** [http://www.uniprot.org/uniprot/P12252 P12252]
 
−
** [http://www.uniprot.org/uniprot/P06776 P06776]
 
−
** [http://www.uniprot.org/uniprot/Q08493 Q08493]
 
−
** [http://www.uniprot.org/uniprot/Q63421 Q63421]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3',5'-cyclic-nucleotide phosphodiesterase}}
+
{{#set: ec-number=ec-3.1.4.14}}
−
{{#set: ec-number=ec-3.1.4.17}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 15:02, 5 January 2021

Reaction 3.1.4.14-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6012, acyl carrier protein metabolism:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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