Difference between revisions of "ATP-PYROPHOSPHATASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-2464 == * direction: ** reversible * common-name: ** 4-hydroxy-4-methyl-2-oxoglutarate aldolase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction PRIBFAICARPISOM-RXN == * direction: ** left-to-right * common-name: ** n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imi...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-2464 ==
+
== Reaction PRIBFAICARPISOM-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 4-hydroxy-4-methyl-2-oxoglutarate aldolase
+
** n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.3.17 ec-4.1.3.17]
+
** [http://enzyme.expasy.org/EC/5.3.1.16 ec-5.3.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[4-OH-4-ACETYL-2-OXOGLUTARATE]][c] '''<=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13180]]
+
* Gene: [[SJ12953]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19186]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
+
* [[HISTSYN-PWY]], L-histidine biosynthesis:
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[GALLATE-DEGRADATION-II-PWY]], gallate degradation I:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[GALLATE-DEGRADATION-I-PWY]], gallate degradation II:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28938 28938]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15470 15470]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00350 R00350]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04640 R04640]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=4-hydroxy-4-methyl-2-oxoglutarate aldolase}}
+
** [http://www.uniprot.org/uniprot/Q02131 Q02131]
−
{{#set: ec-number=ec-4.1.3.17}}
+
** [http://www.uniprot.org/uniprot/Q9JVH4 Q9JVH4]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9PM74 Q9PM74]
−
{{#set: nb pathway associated=4}}
+
** [http://www.uniprot.org/uniprot/P44435 P44435]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P10372 P10372]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P10371 P10371]
 +
** [http://www.uniprot.org/uniprot/P16250 P16250]
 +
** [http://www.uniprot.org/uniprot/P05324 P05324]
 +
** [http://www.uniprot.org/uniprot/P26720 P26720]
 +
** [http://www.uniprot.org/uniprot/P50936 P50936]
 +
** [http://www.uniprot.org/uniprot/P74561 P74561]
 +
** [http://www.uniprot.org/uniprot/O82782 O82782]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase}}
 +
{{#set: ec-number=ec-5.3.1.16}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:03, 5 January 2021

Reaction PRIBFAICARPISOM-RXN

  • direction:
    • left-to-right
  • common-name:
    • n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HISTSYN-PWY, L-histidine biosynthesis:
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ATP-PYROPHOSPHATASE-RXN&oldid=63142"