Difference between revisions of "ATP-PYROPHOSPHATASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction PRIBFAICARPISOM-RXN == * direction: ** left-to-right * common-name: ** n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imi...")
(Created page with "Category:reaction == Reaction OHMETHYLBILANESYN-RXN == * direction: ** left-to-right * common-name: ** hydroxymethylbilane synthase * ec-number: ** [http://enzyme.expasy.o...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PRIBFAICARPISOM-RXN ==
+
== Reaction OHMETHYLBILANESYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
+
** hydroxymethylbilane synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.1.16 ec-5.3.1.16]
+
** [http://enzyme.expasy.org/EC/2.5.1.61 ec-2.5.1.61]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c]
+
* 4 [[PORPHOBILINOGEN]][c] '''+''' 1 [[WATER]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12953]]
+
* Gene: [[SJ02237]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 17: Line 17:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19186]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis:
+
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15470 15470]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04640 R04640]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q02131 Q02131]
+
** [http://www.uniprot.org/uniprot/Q57989 Q57989]
−
** [http://www.uniprot.org/uniprot/Q9JVH4 Q9JVH4]
+
** [http://www.uniprot.org/uniprot/O29026 O29026]
−
** [http://www.uniprot.org/uniprot/Q9PM74 Q9PM74]
+
** [http://www.uniprot.org/uniprot/P64336 P64336]
−
** [http://www.uniprot.org/uniprot/P44435 P44435]
+
** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
−
** [http://www.uniprot.org/uniprot/P10372 P10372]
+
** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
−
** [http://www.uniprot.org/uniprot/P10371 P10371]
+
** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
−
** [http://www.uniprot.org/uniprot/P16250 P16250]
+
** [http://www.uniprot.org/uniprot/P28464 P28464]
−
** [http://www.uniprot.org/uniprot/P05324 P05324]
+
** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
−
** [http://www.uniprot.org/uniprot/P26720 P26720]
+
** [http://www.uniprot.org/uniprot/P56140 P56140]
−
** [http://www.uniprot.org/uniprot/P50936 P50936]
+
** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
−
** [http://www.uniprot.org/uniprot/P74561 P74561]
+
** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
−
** [http://www.uniprot.org/uniprot/O82782 O82782]
+
** [http://www.uniprot.org/uniprot/O26960 O26960]
 +
** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
 +
** [http://www.uniprot.org/uniprot/P06983 P06983]
 +
** [http://www.uniprot.org/uniprot/P13446 P13446]
 +
** [http://www.uniprot.org/uniprot/P08397 P08397]
 +
** [http://www.uniprot.org/uniprot/P22907 P22907]
 +
** [http://www.uniprot.org/uniprot/P19356 P19356]
 +
** [http://www.uniprot.org/uniprot/Q43082 Q43082]
 +
** [http://www.uniprot.org/uniprot/P40129 P40129]
 +
** [http://www.uniprot.org/uniprot/P30527 P30527]
 +
** [http://www.uniprot.org/uniprot/P28789 P28789]
 +
** [http://www.uniprot.org/uniprot/Q60169 Q60169]
 +
** [http://www.uniprot.org/uniprot/Q43316 Q43316]
 +
** [http://www.uniprot.org/uniprot/Q49808 Q49808]
 +
** [http://www.uniprot.org/uniprot/P73660 P73660]
 +
** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
 +
** [http://www.uniprot.org/uniprot/Q09899 Q09899]
 +
** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase}}
+
{{#set: common-name=hydroxymethylbilane synthase}}
−
{{#set: ec-number=ec-5.3.1.16}}
+
{{#set: ec-number=ec-2.5.1.61}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:33, 5 January 2021

Reaction OHMETHYLBILANESYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • hydroxymethylbilane synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate):
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ATP-PYROPHOSPHATASE-RXN&oldid=76170"