Difference between revisions of "ATUD"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] == * direction: ** reversible * common-name: ** phosphoglycerate k...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANYLCYC-RXN GUANYLCYC-RXN] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANYLCYC-RXN GUANYLCYC-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** phosphoglycerate kinase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.2.3 ec-2.7.2.3]
+
** [http://enzyme.expasy.org/EC/4.6.1.2 ec-4.6.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[G3P]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[DPG]][c]
+
* 1 [[GTP]][c] '''=>''' 1 [[CGMP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ01312]]
−
* Gene: [[SJ15992]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05024]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15991]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18020]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15971]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10780]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 
−
** '''12''' reactions found over '''15''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 
−
** '''8''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14804 14804]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13665 13665]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01512 R01512]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00434 R00434]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11977 P11977]
+
** [http://www.uniprot.org/uniprot/P51840 P51840]
−
** [http://www.uniprot.org/uniprot/P09411 P09411]
+
** [http://www.uniprot.org/uniprot/Q24051 Q24051]
−
** [http://www.uniprot.org/uniprot/P09041 P09041]
+
** [http://www.uniprot.org/uniprot/P51842 P51842]
−
** [http://www.uniprot.org/uniprot/P07205 P07205]
+
** [http://www.uniprot.org/uniprot/P51839 P51839]
−
** [http://www.uniprot.org/uniprot/P16617 P16617]
+
** [http://www.uniprot.org/uniprot/P51841 P51841]
−
** [http://www.uniprot.org/uniprot/Q37743 Q37743]
+
** [http://www.uniprot.org/uniprot/O02740 O02740]
−
** [http://www.uniprot.org/uniprot/Q58058 Q58058]
+
** [http://www.uniprot.org/uniprot/Q02846 Q02846]
−
** [http://www.uniprot.org/uniprot/P56154 P56154]
+
** [http://www.uniprot.org/uniprot/Q07093 Q07093]
−
** [http://www.uniprot.org/uniprot/O29119 O29119]
+
** [http://www.uniprot.org/uniprot/P16068 P16068]
−
** [http://www.uniprot.org/uniprot/Q01655 Q01655]
+
** [http://www.uniprot.org/uniprot/P19687 P19687]
−
** [http://www.uniprot.org/uniprot/Q9URB3 Q9URB3]
+
** [http://www.uniprot.org/uniprot/P16066 P16066]
−
** [http://www.uniprot.org/uniprot/P47542 P47542]
+
** [http://www.uniprot.org/uniprot/P20594 P20594]
−
** [http://www.uniprot.org/uniprot/O27121 O27121]
+
** [http://www.uniprot.org/uniprot/P25092 P25092]
−
** [http://www.uniprot.org/uniprot/Q9PMQ5 Q9PMQ5]
+
** [http://www.uniprot.org/uniprot/P18293 P18293]
−
** [http://www.uniprot.org/uniprot/P40924 P40924]
+
** [http://www.uniprot.org/uniprot/P19686 P19686]
−
** [http://www.uniprot.org/uniprot/P43726 P43726]
+
** [http://www.uniprot.org/uniprot/P20595 P20595]
−
** [http://www.uniprot.org/uniprot/O66519 O66519]
+
** [http://www.uniprot.org/uniprot/P22717 P22717]
−
** [http://www.uniprot.org/uniprot/Q9JWS8 Q9JWS8]
+
** [http://www.uniprot.org/uniprot/P16067 P16067]
−
** [http://www.uniprot.org/uniprot/Q9CIW1 Q9CIW1]
+
** [http://www.uniprot.org/uniprot/P18910 P18910]
−
** [http://www.uniprot.org/uniprot/P36204 P36204]
+
** [http://www.uniprot.org/uniprot/P16065 P16065]
−
** [http://www.uniprot.org/uniprot/Q59181 Q59181]
+
** [http://www.uniprot.org/uniprot/P11528 P11528]
−
** [http://www.uniprot.org/uniprot/P50319 P50319]
+
** [http://www.uniprot.org/uniprot/Q7M058 Q7M058]
−
** [http://www.uniprot.org/uniprot/P50310 P50310]
+
** [http://www.uniprot.org/uniprot/Q02153 Q02153]
−
** [http://www.uniprot.org/uniprot/P51903 P51903]
+
** [http://www.uniprot.org/uniprot/Q02108 Q02108]
−
** [http://www.uniprot.org/uniprot/P18912 P18912]
+
** [http://www.uniprot.org/uniprot/Q9TS82 Q9TS82]
−
** [http://www.uniprot.org/uniprot/P41757 P41757]
+
** [http://www.uniprot.org/uniprot/P55203 P55203]
−
** [http://www.uniprot.org/uniprot/P27362 P27362]
+
** [http://www.uniprot.org/uniprot/Q09435 Q09435]
−
** [http://www.uniprot.org/uniprot/P24269 P24269]
+
** [http://www.uniprot.org/uniprot/P55205 P55205]
−
** [http://www.uniprot.org/uniprot/P00560 P00560]
+
** [http://www.uniprot.org/uniprot/O57480 O57480]
−
** [http://www.uniprot.org/uniprot/P25055 P25055]
 
−
** [http://www.uniprot.org/uniprot/Q01604 Q01604]
 
−
** [http://www.uniprot.org/uniprot/P00558 P00558]
 
−
** [http://www.uniprot.org/uniprot/P07377 P07377]
 
−
** [http://www.uniprot.org/uniprot/P07378 P07378]
 
−
** [http://www.uniprot.org/uniprot/P14828 P14828]
 
−
** [http://www.uniprot.org/uniprot/P09404 P09404]
 
−
** [http://www.uniprot.org/uniprot/P29408 P29408]
 
−
** [http://www.uniprot.org/uniprot/P20972 P20972]
 
−
** [http://www.uniprot.org/uniprot/P20971 P20971]
 
−
** [http://www.uniprot.org/uniprot/P24590 P24590]
 
−
** [http://www.uniprot.org/uniprot/P29409 P29409]
 
−
** [http://www.uniprot.org/uniprot/P33161 P33161]
 
−
** [http://www.uniprot.org/uniprot/P29405 P29405]
 
−
** [http://www.uniprot.org/uniprot/P50317 P50317]
 
−
** [http://www.uniprot.org/uniprot/P50315 P50315]
 
−
** [http://www.uniprot.org/uniprot/P29407 P29407]
 
−
** [http://www.uniprot.org/uniprot/P61884 P61884]
 
−
** [http://www.uniprot.org/uniprot/Q42542 Q42542]
 
−
** [http://www.uniprot.org/uniprot/P50318 P50318]
 
−
** [http://www.uniprot.org/uniprot/P46712 P46712]
 
−
** [http://www.uniprot.org/uniprot/P78018 P78018]
 
−
** [http://www.uniprot.org/uniprot/Q49073 Q49073]
 
−
** [http://www.uniprot.org/uniprot/Q42961 Q42961]
 
−
** [http://www.uniprot.org/uniprot/Q42962 Q42962]
 
−
** [http://www.uniprot.org/uniprot/O81394 O81394]
 
−
** [http://www.uniprot.org/uniprot/P41758 P41758]
 
−
** [http://www.uniprot.org/uniprot/O32756 O32756]
 
−
** [http://www.uniprot.org/uniprot/P38667 P38667]
 
−
** [http://www.uniprot.org/uniprot/P08966 P08966]
 
−
** [http://www.uniprot.org/uniprot/P08967 P08967]
 
−
** [http://www.uniprot.org/uniprot/P0A799 P0A799]
 
−
** [http://www.uniprot.org/uniprot/P09188 P09188]
 
−
** [http://www.uniprot.org/uniprot/P14228 P14228]
 
−
** [http://www.uniprot.org/uniprot/P08891 P08891]
 
−
** [http://www.uniprot.org/uniprot/P08892 P08892]
 
−
** [http://www.uniprot.org/uniprot/P08893 P08893]
 
−
** [http://www.uniprot.org/uniprot/P12782 P12782]
 
−
** [http://www.uniprot.org/uniprot/P12783 P12783]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphoglycerate kinase}}
+
{{#set: ec-number=ec-4.6.1.2}}
−
{{#set: ec-number=ec-2.7.2.3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=14}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:25, 26 August 2019

Reaction GUANYLCYC-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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