Difference between revisions of "AUPT"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.5-RXN 3.1.27.5-RXN] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.o...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == * direction: ** left-to-right * common-name: ** farnesyl-diphosphate farnes...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.5-RXN 3.1.27.5-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** farnesyl-diphosphate farnesyltransferase
 +
** presqualene diphosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.27.5 ec-3.1.27.5]
+
** [http://enzyme.expasy.org/EC/2.5.1.103 ec-2.5.1.103]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[RNA-Holder]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[3-Phosphomonucleotides]][c] '''+''' 1 [[3-phosphooligoribonucleotides]][c]
+
* 2 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-465]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12696]]
+
* Gene: [[SJ13532]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02885]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5875]], staphyloxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5875 PWY-5875]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6767 PWY-6767]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6105 PWY-6105]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19640 P19640]
+
** [http://www.uniprot.org/uniprot/O69445 O69445]
−
** [http://www.uniprot.org/uniprot/P08904 P08904]
+
** [http://www.uniprot.org/uniprot/P36596 P36596]
−
** [http://www.uniprot.org/uniprot/P19644 P19644]
+
** [http://www.uniprot.org/uniprot/O65688 O65688]
−
** [http://www.uniprot.org/uniprot/P07998 P07998]
+
** [http://www.uniprot.org/uniprot/O23118 O23118]
−
** [http://www.uniprot.org/uniprot/P81649 P81649]
+
** [http://www.uniprot.org/uniprot/O22107 O22107]
−
** [http://www.uniprot.org/uniprot/P14626 P14626]
+
** [http://www.uniprot.org/uniprot/Q40472 Q40472]
−
** [http://www.uniprot.org/uniprot/P15467 P15467]
+
** [http://www.uniprot.org/uniprot/O22106 O22106]
−
** [http://www.uniprot.org/uniprot/P00658 P00658]
+
** [http://www.uniprot.org/uniprot/P53800 P53800]
−
** [http://www.uniprot.org/uniprot/P00659 P00659]
+
** [http://www.uniprot.org/uniprot/P53799 P53799]
−
** [http://www.uniprot.org/uniprot/P61823 P61823]
+
** [http://www.uniprot.org/uniprot/P53798 P53798]
−
** [http://www.uniprot.org/uniprot/P00669 P00669]
+
** [http://www.uniprot.org/uniprot/P29704 P29704]
−
** [http://www.uniprot.org/uniprot/P00675 P00675]
+
** [http://www.uniprot.org/uniprot/Q04903 Q04903]
−
** [http://www.uniprot.org/uniprot/P67928 P67928]
+
** [http://www.uniprot.org/uniprot/Q42761 Q42761]
−
** [http://www.uniprot.org/uniprot/P67929 P67929]
+
** [http://www.uniprot.org/uniprot/Q42760 Q42760]
−
** [http://www.uniprot.org/uniprot/P00676 P00676]
+
** [http://www.uniprot.org/uniprot/P37268 P37268]
−
** [http://www.uniprot.org/uniprot/P00665 P00665]
+
** [http://www.uniprot.org/uniprot/Q02769 Q02769]
−
** [http://www.uniprot.org/uniprot/P00666 P00666]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P00664 P00664]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
−
** [http://www.uniprot.org/uniprot/P00663 P00663]
 
−
** [http://www.uniprot.org/uniprot/P00667 P00667]
 
−
** [http://www.uniprot.org/uniprot/P00662 P00662]
 
−
** [http://www.uniprot.org/uniprot/P00660 P00660]
 
−
** [http://www.uniprot.org/uniprot/P00678 P00678]
 
−
** [http://www.uniprot.org/uniprot/P00679 P00679]
 
−
** [http://www.uniprot.org/uniprot/P67926 P67926]
 
−
** [http://www.uniprot.org/uniprot/P00674 P00674]
 
−
** [http://www.uniprot.org/uniprot/P00672 P00672]
 
−
** [http://www.uniprot.org/uniprot/P00682 P00682]
 
−
** [http://www.uniprot.org/uniprot/P00686 P00686]
 
−
** [http://www.uniprot.org/uniprot/P04059 P04059]
 
−
** [http://www.uniprot.org/uniprot/P00683 P00683]
 
−
** [http://www.uniprot.org/uniprot/P00685 P00685]
 
−
** [http://www.uniprot.org/uniprot/P00681 P00681]
 
−
** [http://www.uniprot.org/uniprot/P00671 P00671]
 
−
** [http://www.uniprot.org/uniprot/P04060 P04060]
 
−
** [http://www.uniprot.org/uniprot/P00668 P00668]
 
−
** [http://www.uniprot.org/uniprot/P00684 P00684]
 
−
** [http://www.uniprot.org/uniprot/P67927 P67927]
 
−
** [http://www.uniprot.org/uniprot/P04061 P04061]
 
−
** [http://www.uniprot.org/uniprot/P00680 P00680]
 
−
** [http://www.uniprot.org/uniprot/P00657 P00657]
 
−
** [http://www.uniprot.org/uniprot/P00673 P00673]
 
−
** [http://www.uniprot.org/uniprot/P00677 P00677]
 
−
** [http://www.uniprot.org/uniprot/P16414 P16414]
 
−
** [http://www.uniprot.org/uniprot/P07847 P07847]
 
−
** [http://www.uniprot.org/uniprot/P07848 P07848]
 
−
** [http://www.uniprot.org/uniprot/P07849 P07849]
 
−
** [http://www.uniprot.org/uniprot/P39873 P39873]
 
−
** [http://www.uniprot.org/uniprot/P24717 P24717]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-3.1.27.5}}
+
{{#set: common-name=farnesyl-diphosphate farnesyltransferase|presqualene diphosphate synthase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-2.5.1.103}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 14:26, 26 August 2019

Reaction RXN-12263

  • direction:
    • left-to-right
  • common-name:
    • farnesyl-diphosphate farnesyltransferase
    • presqualene diphosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5875, staphyloxanthin biosynthesis: PWY-5875
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6767, 4,4'-diapolycopenedioate biosynthesis: PWY-6767
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-6105, botryococcenes and methylated squalene biosynthesis: PWY-6105
    • 2 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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