Difference between revisions of "BETA-L-ARABINOSIDASE-RXN"

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(Created page with "Category:reaction == Reaction BADH-RXN == * direction: ** reversible * common-name: ** betaine-aldehyde dehydrogenase ** betaine aldehyde dehydrogenase * ec-number: ** [ht...")
(Created page with "Category:reaction == Reaction UNSPECIFIC-MONOOXYGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.14.1 ec-1.14.14.1] == Reactio...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BADH-RXN ==
+
== Reaction UNSPECIFIC-MONOOXYGENASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** betaine-aldehyde dehydrogenase
 
−
** betaine aldehyde dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.8 ec-1.2.1.8]
+
** [http://enzyme.expasy.org/EC/1.14.14.1 ec-1.14.14.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BETAINE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[RH-Group]][c] '''+''' 1 [[Red-NADPH-Hemoprotein-Reductases]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[Ox-NADPH-Hemoprotein-Reductases]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ00435]]
+
* Gene: [[SJ05072]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11330]]
+
* Gene: [[SJ05370]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22552]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11331]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09287]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06047]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05897]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07227]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03397]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18127]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12861]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19505]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05110]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09087]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07228]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY1F-353]], glycine betaine biosynthesis III (plants):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria):
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria):
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7494]], choline degradation IV:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04122 R04122]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P17202 P17202]
+
** [http://www.uniprot.org/uniprot/P04800 P04800]
−
** [http://www.uniprot.org/uniprot/P17445 P17445]
+
** [http://www.uniprot.org/uniprot/Q06884 Q06884]
−
** [http://www.uniprot.org/uniprot/P28237 P28237]
+
** [http://www.uniprot.org/uniprot/P10632 P10632]
−
** [http://www.uniprot.org/uniprot/P42757 P42757]
+
** [http://www.uniprot.org/uniprot/P14779 P14779]
−
** [http://www.uniprot.org/uniprot/Q40024 Q40024]
+
** [http://www.uniprot.org/uniprot/O08336 O08336]
−
** [http://www.uniprot.org/uniprot/O24174 O24174]
+
** [http://www.uniprot.org/uniprot/Q7M0C2 Q7M0C2]
−
** [http://www.uniprot.org/uniprot/Q43828 Q43828]
+
** [http://www.uniprot.org/uniprot/P00185 P00185]
−
** [http://www.uniprot.org/uniprot/Q43829 Q43829]
+
** [http://www.uniprot.org/uniprot/P00176 P00176]
−
** [http://www.uniprot.org/uniprot/O22477 O22477]
+
** [http://www.uniprot.org/uniprot/P49602 P49602]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P43083 P43083]
−
{{#set: common-name=betaine aldehyde dehydrogenase|betaine-aldehyde dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/Q12573 Q12573]
−
{{#set: ec-number=ec-1.2.1.8}}
+
** [http://www.uniprot.org/uniprot/O04892 O04892]
−
{{#set: nb gene associated=7}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb pathway associated=5}}
+
{{#set: ec-number=ec-1.14.14.1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb gene associated=10}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:34, 5 January 2021

Reaction UNSPECIFIC-MONOOXYGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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