Difference between revisions of "BETAGALACTOSID-RXN"

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(Created page with "Category:reaction == Reaction PROPIONYL-COA-CARBOXY-RXN == * direction: ** reversible * common-name: ** propionyl-coa carboxylase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction KETOACYLCOATHIOL-RXN == * direction: ** left-to-right * common-name: ** acetyl-coa c-acyltransferase ** 3-ketoacyl-coa thiolase * ec-number:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PROPIONYL-COA-CARBOXY-RXN ==
+
== Reaction KETOACYLCOATHIOL-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** propionyl-coa carboxylase
+
** acetyl-coa c-acyltransferase
 +
** 3-ketoacyl-coa thiolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.4.1.3 ec-6.4.1.3]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
 +
* synonymous:
 +
** beta-ketothiolase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[PROPIONYL-COA]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[D-METHYL-MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12870]]
+
* Gene: [[SJ21818]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ16470]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
* Gene: [[SJ08104]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21817]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14898]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09371]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
+
* [[PWY-7288]], fatty acid &beta;-oxidation VII (yeast peroxisome):
−
** '''8''' reactions found over '''18''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5743]], 3-hydroxypropanoate cycle:
+
* [[PWY-5136]], fatty acid &beta;-oxidation II (plant peroxisome):
−
** '''5''' reactions found over '''13''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PROPIONMET-PWY]], propanoyl CoA degradation I:
+
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6728]], methylaspartate cycle:
+
* [[PWY66-391]], fatty acid &beta;-oxidation VI (mammalian peroxisome):
−
** '''11''' reactions found over '''19''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23723 23723]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21566 21566]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURTAB XURTAB]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURTAA XURTAA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURT XURT]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XUHUAB XUHUAB]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XUEC XUEC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52165 T52165]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52110 T52110]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07989 T07989]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S72532 S72532]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57792 S57792]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36838 S36838]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33637 S33637]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S22784 S22784]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JS0624 JS0624]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64890 H64890]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P77525 P77525]
 +
** [http://www.uniprot.org/uniprot/P28790 P28790]
 +
** [http://www.uniprot.org/uniprot/P27796 P27796]
 +
** [http://www.uniprot.org/uniprot/Q08375 Q08375]
 +
** [http://www.uniprot.org/uniprot/Q05493 Q05493]
 +
** [http://www.uniprot.org/uniprot/Q42918 Q42918]
 +
** [http://www.uniprot.org/uniprot/Q43742 Q43742]
 +
** [http://www.uniprot.org/uniprot/Q56WD9 Q56WD9]
 +
** [http://www.uniprot.org/uniprot/Q570C8 Q570C8]
 +
** [http://www.uniprot.org/uniprot/P21151 P21151]
 +
** [http://www.uniprot.org/uniprot/P09110 P09110]
 +
** [http://www.uniprot.org/uniprot/P13437 P13437]
 +
** [http://www.uniprot.org/uniprot/P21775 P21775]
 +
** [http://www.uniprot.org/uniprot/P07871 P07871]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01859 R01859]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00391 R00391]
−
* UNIPROT:
+
</div>
−
** [http://www.uniprot.org/uniprot/Q96CX0 Q96CX0]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P07633 P07633]
+
{{#set: common-name=3-ketoacyl-coa thiolase|acetyl-coa c-acyltransferase}}
−
** [http://www.uniprot.org/uniprot/P05165 P05165]
+
{{#set: ec-number=ec-2.3.1.16}}
−
** [http://www.uniprot.org/uniprot/Q06101 Q06101]
+
{{#set: synonymous=beta-ketothiolase}}
−
** [http://www.uniprot.org/uniprot/Q20676 Q20676]
+
{{#set: nb gene associated=5}}
−
** [http://www.uniprot.org/uniprot/O24789 O24789]
+
{{#set: nb pathway associated=4}}
−
{{#set: direction=reversible}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: common-name=propionyl-coa carboxylase}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: ec-number=ec-6.4.1.3}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:07, 5 January 2021

Reaction KETOACYLCOATHIOL-RXN

  • direction:
    • left-to-right
  • common-name:
    • acetyl-coa c-acyltransferase
    • 3-ketoacyl-coa thiolase
  • ec-number:
  • synonymous:
    • beta-ketothiolase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7288, fatty acid β-oxidation VII (yeast peroxisome):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5136, fatty acid β-oxidation II (plant peroxisome):
    • 5 reactions found over 5 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I (generic):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (mammalian peroxisome):
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






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