Difference between revisions of "BETAINE ALDEHYDE"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHACYL-COA-DEHYDROG-RXN OHACYL-COA-DEHYDROG-RXN] == * direction: ** left-to-right * common-name: **...")
(Created page with "Category:metabolite == Metabolite CPD-12905 == * common-name: ** 3-hydroxy-5-methylhex-4-enoyl-coa * smiles: ** cc(c)=cc(o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)...")
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHACYL-COA-DEHYDROG-RXN OHACYL-COA-DEHYDROG-RXN] ==
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== Metabolite CPD-12905 ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** 3-hydroxyacyl-coa dehydrogenase
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** 3-hydroxy-5-methylhex-4-enoyl-coa
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
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** cc(c)=cc(o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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== Reaction formula ==
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* inchi-key:
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* 1 [[L-3-HYDROXYACYL-COA]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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** olzynlskrkfujc-fpviqycmsa-j
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** 889.657
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* Gene: [[SJ17348]]
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== Reaction(s) known to consume the compound ==
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** Category: [[annotation]]
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== Reaction(s) known to produce the compound ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[RXN-11919]]
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* Gene: [[SJ03584]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=3-hydroxy-5-methylhex-4-enoyl-coa}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: inchi-key=inchikey=olzynlskrkfujc-fpviqycmsa-j}}
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* Gene: [[SJ01444]]
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{{#set: molecular-weight=889.657}}
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ16180]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ07211]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21390]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ06127]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ16470]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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</div>
 
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== Pathway(s) ==
 
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* [[PWY-5136]], fatty acid &beta;-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[FAO-PWY]], fatty acid &beta;-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY66-391]], fatty acid &beta;-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
 
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** '''4''' reactions found over '''6''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22433 22433]
 
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* PIR:
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55045 A55045]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPGC DEPGC]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4210 JC4210]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4879 JC4879]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40743 S40743]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74114 S74114]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46866 T46866]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P21177 P21177]
 
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** [http://www.uniprot.org/uniprot/Q08426 Q08426]
 
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** [http://www.uniprot.org/uniprot/Q53924 Q53924]
 
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** [http://www.uniprot.org/uniprot/P07896 P07896]
 
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** [http://www.uniprot.org/uniprot/Q61425 Q61425]
 
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** [http://www.uniprot.org/uniprot/Q16836 Q16836]
 
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** [http://www.uniprot.org/uniprot/P28793 P28793]
 
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** [http://www.uniprot.org/uniprot/P22414 P22414]
 
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** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
 
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** [http://www.uniprot.org/uniprot/P34439 P34439]
 
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** [http://www.uniprot.org/uniprot/Q01373 Q01373]
 
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** [http://www.uniprot.org/uniprot/P55100 P55100]
 
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** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 
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** [http://www.uniprot.org/uniprot/P00348 P00348]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01778 R01778]
 
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</div>
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=3-hydroxyacyl-coa dehydrogenase}}
 
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{{#set: ec-number=ec-1.1.1.35}}
 
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{{#set: nb gene associated=8}}
 
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{{#set: nb pathway associated=4}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Revision as of 20:36, 18 December 2020

Metabolite CPD-12905

  • common-name:
    • 3-hydroxy-5-methylhex-4-enoyl-coa
  • smiles:
    • cc(c)=cc(o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
  • inchi-key:
    • olzynlskrkfujc-fpviqycmsa-j
  • molecular-weight:
    • 889.657

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

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