Difference between revisions of "BIOTIN-CARBOXYL-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1501 PWY-1501] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-1224 tax-12...")
(Created page with "Category:reaction == Reaction BIOTIN-CARBOXYL-RXN == * direction: ** left-to-right * common-name: ** biotin carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4....")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1501 PWY-1501] ==
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== Reaction BIOTIN-CARBOXYL-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-1224 tax-1224]
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** left-to-right
 
* common-name:
 
* common-name:
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** mandelate degradation i
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** biotin carboxylase
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== Reaction(s) found ==
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* ec-number:
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* [[BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN]]
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** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14]
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== Reaction(s) not found ==
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MANDELATE-DEHYDROGENASE-RXN MANDELATE-DEHYDROGENASE-RXN]
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* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=MANDELATE-RACEMASE-RXN MANDELATE-RACEMASE-RXN]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=BENZOYLFORMATE-DECARBOXYLASE-RXN BENZOYLFORMATE-DECARBOXYLASE-RXN]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [http://metacyc.org/META/NEW-IMAGE?object=BENZALDEHYDE-DEHYDROGENASE-NADP+-RXN BENZALDEHYDE-DEHYDROGENASE-NADP+-RXN]
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* Gene: [[SJ00485]]
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{{#set: taxonomic-range=tax-1224}}
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** Category: [[annotation]]
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{{#set: common-name=mandelate degradation i}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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{{#set: nb reaction found=1}}
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* Gene: [[SJ14529]]
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{{#set: completion rate=0.2}}
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** Category: [[annotation]]
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{{#set: nb total reaction=5}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ06726]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ14528]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ12870]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ02214]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ12670]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ17987]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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</div>
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== Pathway(s) ==
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* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5744]], glyoxylate assimilation:
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** '''4''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5743]], 3-hydroxypropanoate cycle:
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** '''5''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
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** '''8''' reactions found over '''18''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR115738
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q06862 Q06862]
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** [http://www.uniprot.org/uniprot/O67483 O67483]
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** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3]
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** [http://www.uniprot.org/uniprot/Q58626 Q58626]
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** [http://www.uniprot.org/uniprot/P43873 P43873]
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** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09]
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** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07]
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** [http://www.uniprot.org/uniprot/P24182 P24182]
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** [http://www.uniprot.org/uniprot/O04983 O04983]
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** [http://www.uniprot.org/uniprot/O81273 O81273]
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** [http://www.uniprot.org/uniprot/Q42777 Q42777]
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** [http://www.uniprot.org/uniprot/Q39825 Q39825]
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** [http://www.uniprot.org/uniprot/O23960 O23960]
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** [http://www.uniprot.org/uniprot/O52602 O52602]
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** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=biotin carboxylase}}
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{{#set: ec-number=ec-6.3.4.14}}
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{{#set: nb gene associated=8}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction BIOTIN-CARBOXYL-RXN

  • direction:
    • left-to-right
  • common-name:
    • biotin carboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1264, biotin-carboxyl carrier protein assembly:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5744, glyoxylate assimilation:
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-5743, 3-hydroxypropanoate cycle:
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
    • 8 reactions found over 18 reactions in the full pathway

Reconstruction information

External links





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