Difference between revisions of "BIOTIN-CARBOXYL-RXN"

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(Created page with "Category:reaction == Reaction 2.3.1.41-RXN == * direction: ** reversible * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction BIOTIN-CARBOXYL-RXN == * direction: ** left-to-right * common-name: ** biotin carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4....")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.3.1.41-RXN ==
+
== Reaction BIOTIN-CARBOXYL-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
** biotin carboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ18059]]
+
* Gene: [[SJ00485]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06617]]
+
* Gene: [[SJ14529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06726]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14528]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12870]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ04443]]
+
* Gene: [[SJ02214]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12670]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ17987]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00005]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15984]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5744]], glyoxylate assimilation:
 +
** '''4''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5743]], 3-hydroxypropanoate cycle:
 +
** '''5''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR107714
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115738
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02768 R02768]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase}}
+
** [http://www.uniprot.org/uniprot/Q06862 Q06862]
−
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
+
** [http://www.uniprot.org/uniprot/O67483 O67483]
−
{{#set: nb gene associated=7}}
+
** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/Q58626 Q58626]
−
{{#set: reconstruction category=orthology|annotation}}
+
** [http://www.uniprot.org/uniprot/P43873 P43873]
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09]
 +
** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07]
 +
** [http://www.uniprot.org/uniprot/P24182 P24182]
 +
** [http://www.uniprot.org/uniprot/O04983 O04983]
 +
** [http://www.uniprot.org/uniprot/O81273 O81273]
 +
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
 +
** [http://www.uniprot.org/uniprot/Q39825 Q39825]
 +
** [http://www.uniprot.org/uniprot/O23960 O23960]
 +
** [http://www.uniprot.org/uniprot/O52602 O52602]
 +
** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=biotin carboxylase}}
 +
{{#set: ec-number=ec-6.3.4.14}}
 +
{{#set: nb gene associated=8}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction BIOTIN-CARBOXYL-RXN

  • direction:
    • left-to-right
  • common-name:
    • biotin carboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1264, biotin-carboxyl carrier protein assembly:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5744, glyoxylate assimilation:
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-5743, 3-hydroxypropanoate cycle:
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
    • 8 reactions found over 18 reactions in the full pathway

Reconstruction information

External links





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