Difference between revisions of "BIOTINLIG-RXN"
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(Created page with "Category:reaction == Reaction RXN-12894 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.110 ec-3.5.1.110] == Reaction formula == * 1 ...") |
(Created page with "Category:reaction == Reaction BIOTINLIG-RXN == * direction: ** left-to-right * common-name: ** biotin-[acetyl-coa-carboxylase] ligase * ec-number: ** [http://enzyme.expasy...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction BIOTINLIG-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** biotin-[acetyl-coa-carboxylase] ligase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/3. | + | ** [http://enzyme.expasy.org/EC/6.3.4.15 ec-6.3.4.15] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[BCCP-L-lysine]][c] '''+''' 1 [[BIOTIN]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[BCCP-biotin-L-lysine]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ10816]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ06657]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ19949]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ07132]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY0-1264]], biotin-carboxyl carrier protein assembly: | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| − | * | + | * METANETX-RXN : MNXR115739 |
| − | ** [http://www. | + | * UNIPROT: |
| − | * | + | ** [http://www.uniprot.org/uniprot/P06709 P06709] |
| − | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/Q9PJ27 Q9PJ27] |
| + | ** [http://www.uniprot.org/uniprot/Q9CEQ6 Q9CEQ6] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9CED9 Q9CED9] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9JWI7 Q9JWI7] | ||
| + | ** [http://www.uniprot.org/uniprot/P48445 P48445] | ||
| + | ** [http://www.uniprot.org/uniprot/P72816 P72816] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: ec-number=ec-3. | + | {{#set: common-name=biotin-[acetyl-coa-carboxylase] ligase}} |
| − | {{#set: nb gene associated= | + | {{#set: ec-number=ec-6.3.4.15}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb gene associated=4}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: nb pathway associated=1}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=orthology|annotation}} |
| + | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:23, 18 March 2021
Contents
Reaction BIOTINLIG-RXN
- direction:
- left-to-right
- common-name:
- biotin-[acetyl-coa-carboxylase] ligase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 BCCP-L-lysine[c] + 1 BIOTIN[c] => 1 AMP[c] + 1 BCCP-biotin-L-lysine[c] + 1 PPI[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ10816
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06657
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ19949
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ07132
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY0-1264, biotin-carboxyl carrier protein assembly:
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
Property "Common-name" (as page type) with input value "biotin-[acetyl-coa-carboxylase] ligase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
