Difference between revisions of "BRANCHED-CHAINAMINOTRANSFERILEU-RXN"
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(Created page with "Category:reaction == Reaction OAACITtm == * direction: ** reversible * common-name: ** dicarboxylate/tricarboxylate carrier (oaa:cit), mitochondrial == Reaction formula ==...") |
(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERILEU-RXN == * direction: ** reversible * common-name: ** isoleucine transaminase * ec-number: ** [http://enzyme.ex...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction BRANCHED-CHAINAMINOTRANSFERILEU-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
* common-name: | * common-name: | ||
− | ** | + | ** isoleucine transaminase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[ILE]][c] '''<=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[GLT]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ04586]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ06412]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13018]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ17677]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[ILEUDEG-PWY]], L-isoleucine degradation I: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5078]], L-isoleucine degradation II: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-5103]], L-isoleucine biosynthesis III: | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5104]], L-isoleucine biosynthesis IV: | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5101]], L-isoleucine biosynthesis II: | ||
+ | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5108]], L-isoleucine biosynthesis V: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR96228 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24804 24804] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02199 R02199] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6] | ||
+ | ** [http://www.uniprot.org/uniprot/P38891 P38891] | ||
+ | ** [http://www.uniprot.org/uniprot/P47176 P47176] | ||
+ | ** [http://www.uniprot.org/uniprot/O86505 O86505] | ||
+ | ** [http://www.uniprot.org/uniprot/O14370 O14370] | ||
+ | ** [http://www.uniprot.org/uniprot/O32954 O32954] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AB80 P0AB80] | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
− | {{#set: common-name= | + | {{#set: common-name=isoleucine transaminase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-2.6.1.42}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=4}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: nb pathway associated=7}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=orthology|annotation}} |
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:22, 18 March 2021
Contents
Reaction BRANCHED-CHAINAMINOTRANSFERILEU-RXN
- direction:
- reversible
- common-name:
- isoleucine transaminase
- ec-number:
Reaction formula
- 1 2-KETOGLUTARATE[c] + 1 ILE[c] <=> 1 2-KETO-3-METHYL-VALERATE[c] + 1 GLT[c]
Gene(s) associated with this reaction
- Gene: SJ04586
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06412
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13018
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ17677
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- ILEUSYN-PWY, L-isoleucine biosynthesis I (from threonine):
- 4 reactions found over 7 reactions in the full pathway
- ILEUDEG-PWY, L-isoleucine degradation I:
- 5 reactions found over 6 reactions in the full pathway
- PWY-5078, L-isoleucine degradation II:
- 2 reactions found over 3 reactions in the full pathway
- PWY-5103, L-isoleucine biosynthesis III:
- 3 reactions found over 7 reactions in the full pathway
- PWY-5104, L-isoleucine biosynthesis IV:
- 2 reactions found over 6 reactions in the full pathway
- PWY-5101, L-isoleucine biosynthesis II:
- 4 reactions found over 8 reactions in the full pathway
- PWY-5108, L-isoleucine biosynthesis V:
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR96228
- RHEA:
- LIGAND-RXN:
- UNIPROT: