Difference between revisions of "BRANCHED-CHAINAMINOTRANSFERVAL-RXN"

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(Created page with "Category:reaction == Reaction CHD-RXN == * direction: ** reversible * common-name: ** choline dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.99.1 ec-1.1.99...")
(Created page with "Category:reaction == Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN == * direction: ** left-to-right * common-name: ** 5-formyltetrahydrofolate cyclo-ligase * ec-number: ** [http:...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CHD-RXN ==
+
== Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** choline dehydrogenase
+
** 5-formyltetrahydrofolate cyclo-ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.99.1 ec-1.1.99.1]
+
** [http://enzyme.expasy.org/EC/6.3.3.2 ec-6.3.3.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Acceptor]][c] '''+''' 1 [[CHOLINE]][c] '''<=>''' 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[Donor-H2]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[N5-Formyl-THF-Glu-N]][c] '''=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12409]]
+
* Gene: [[SJ19600]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ09287]]
+
* Gene: [[SJ02064]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06047]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ22552]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ07158]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 30: Line 19:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria):
+
* [[PWY-2201]], folate transformations I:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I:
+
* [[1CMET2-PWY]], folate transformations III (E. coli):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115622
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17436 17436]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10489 10489]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01025 R01025]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02301 R02301]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P17444 P17444]
+
** [http://www.uniprot.org/uniprot/P80405 P80405]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P49914 P49914]
−
{{#set: common-name=choline dehydrogenase}}
+
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.1.99.1}}
+
{{#set: common-name=5-formyltetrahydrofolate cyclo-ligase}}
−
{{#set: nb gene associated=5}}
+
{{#set: ec-number=ec-6.3.3.2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 5-formyltetrahydrofolate cyclo-ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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