Difference between revisions of "Basic-Amino-Acids"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1435 RXN1G-1435] == * direction: ** left-to-right * common-name: ** 6-o-mycolyl-trehalose-6-p...")
 
(Created page with "Category:gene == Gene SJ14716 == * transcription-direction: ** negative * right-end-position: ** 200687 * left-end-position: ** 197335 * centisome-position: ** 63.553738...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1435 RXN1G-1435] ==
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== Gene SJ14716 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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* common-name:
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* right-end-position:
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** 6-o-mycolyl-trehalose-6-phosphate phosphohydrolase
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** 200687
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/3.1.3.12 ec-3.1.3.12]
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** 197335
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== Reaction formula ==
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* centisome-position:
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* 1 [[CPD1G-768]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD1G-1344]][c] '''+''' 1 [[Pi]][c]
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** 63.553738   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ21325]]
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== Reaction(s) associated ==
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* [[GLYCINE-N-METHYLTRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-13404]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21183]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-13405]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ07303]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-13406]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ13486]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[SJ18485]]
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* [[RXN-9679]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-9680]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ18387]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[P541-PWY]]
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* Gene: [[SJ17025]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-6004]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** Category: [[orthology]]
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{{#set: transcription-direction=negative}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: right-end-position=200687}}
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* Gene: [[SJ10128]]
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{{#set: left-end-position=197335}}
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** Category: [[annotation]]
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{{#set: centisome-position=63.553738    }}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** Category: [[orthology]]
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{{#set: nb reaction associated=6}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb pathway associated=2}}
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* Gene: [[SJ08873]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21324]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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</div>
 
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== Pathway(s) ==
 
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* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
 
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** '''26''' reactions found over '''182''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=6-o-mycolyl-trehalose-6-phosphate phosphohydrolase}}
 
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{{#set: ec-number=ec-3.1.3.12}}
 
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{{#set: nb gene associated=10}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Revision as of 14:24, 26 August 2019

Gene SJ14716

  • transcription-direction:
    • negative
  • right-end-position:
    • 200687
  • left-end-position:
    • 197335
  • centisome-position:
    • 63.553738

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • P541-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004
    • 3 reactions found over 3 reactions in the full pathway




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