Difference between revisions of "Biomass rxn"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROTATE-DEHYDROGENASE-RXN DIHYDROOROTATE-DEHYDROGENASE-RXN] == * direction: ** left-to-right...")
(Created page with "Category:reaction == Reaction RNA-URIDYLYLTRANSFERASE-RXN == * direction: ** reversible * common-name: ** rna uridylyltransferase * ec-number: ** [http://enzyme.expasy.org...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROTATE-DEHYDROGENASE-RXN DIHYDROOROTATE-DEHYDROGENASE-RXN] ==
+
== Reaction RNA-URIDYLYLTRANSFERASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** dihydroorotate dehydrogenase
+
** rna uridylyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.5.2 ec-1.3.5.2]
+
** [http://enzyme.expasy.org/EC/2.7.7.52 ec-2.7.7.52]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DI-H-OROTATE]][c] '''+''' 1 [[ETR-Quinones]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[OROTATE]][c]
+
* 1 [[RNA-Holder]][c] '''+''' 1 [[UTP]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[RNA-Holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18134]]
+
* Gene: [[SJ17317]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12257]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18074 18074]
+
{{#set: common-name=rna uridylyltransferase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.7.7.52}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01868 R01868]
+
{{#set: nb gene associated=2}}
−
* UNIPROT:
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/O76140 O76140]
+
{{#set: reconstruction category=annotation}}
−
{{#set: direction=left-to-right}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: common-name=dihydroorotate dehydrogenase}}
 
−
{{#set: ec-number=ec-1.3.5.2}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:42, 18 December 2020

Reaction RNA-URIDYLYLTRANSFERASE-RXN

  • direction:
    • reversible
  • common-name:
    • rna uridylyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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