Difference between revisions of "C5"

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(Created page with "Category:gene == Gene SJ00484 == * transcription-direction: ** positive * right-end-position: ** 97905 * left-end-position: ** 80034 * centisome-position: ** 48.075397...")
(Created page with "Category:metabolite == Metabolite C5 == * common-name: ** undecaprenyldiphospho-n-acetylmuramoyl-l-alanyl-γ-d-glutamyl-meso-2,6-diaminopimeloyl-d-alanyl-d-alanine *...")
 
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ00484 ==
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== Metabolite C5 ==
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* transcription-direction:
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* common-name:
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** positive
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** undecaprenyldiphospho-n-acetylmuramoyl-l-alanyl-γ-d-glutamyl-meso-2,6-diaminopimeloyl-d-alanyl-d-alanine
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* right-end-position:
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* smiles:
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** 97905
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** cc(c)=cccc(c)=cccc(c)=cccc(=cccc(=cccc(=cccc(c)=cccc(=cccc(=cccc(=cccc(=ccop(op([o-])(=o)oc1(c(nc(=o)c)c(oc(c)c(=o)nc(c)c(=o)nc(c(=o)[o-])ccc(=o)nc(cccc([n+])c(=o)[o-])c(nc(c)c(=o)nc(c)c([o-])=o)=o)c(o)c(co)o1))([o-])=o)c)c)c)c)c)c)c
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* left-end-position:
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* inchi-key:
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** 80034
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** pnwzqtonlrrpst-kldrqjoasa-j
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* centisome-position:
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* molecular-weight:
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** 48.075397   
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** 1713.036
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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* [[PHOSNACMURPENTATRANS-RXN]]
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=undecaprenyldiphospho-n-acetylmuramoyl-l-alanyl-γ-d-glutamyl-meso-2,6-diaminopimeloyl-d-alanyl-d-alanine}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=pnwzqtonlrrpst-kldrqjoasa-j}}
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** Category: [[orthology]]
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{{#set: molecular-weight=1713.036}}
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN0-5055]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== Pathway(s) associated ==
 
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* [[PWY-7388]]
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6679]]
 
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** '''1''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-5744]]
 
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** '''4''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-5743]]
 
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** '''5''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-5789]]
 
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** '''8''' reactions found over '''18''' reactions in the full pathway
 
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* [[PWY0-1264]]
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6722]]
 
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** '''1''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-4381]]
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=97905}}
 
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{{#set: left-end-position=80034}}
 
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{{#set: centisome-position=48.075397    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=2}}
 
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{{#set: nb pathway associated=8}}
 

Latest revision as of 11:14, 18 March 2021

Metabolite C5

  • common-name:
    • undecaprenyldiphospho-n-acetylmuramoyl-l-alanyl-γ-d-glutamyl-meso-2,6-diaminopimeloyl-d-alanyl-d-alanine
  • smiles:
    • cc(c)=cccc(c)=cccc(c)=cccc(=cccc(=cccc(=cccc(c)=cccc(=cccc(=cccc(=cccc(=ccop(op([o-])(=o)oc1(c(nc(=o)c)c(oc(c)c(=o)nc(c)c(=o)nc(c(=o)[o-])ccc(=o)nc(cccc([n+])c(=o)[o-])c(nc(c)c(=o)nc(c)c([o-])=o)=o)c(o)c(co)o1))([o-])=o)c)c)c)c)c)c)c
  • inchi-key:
    • pnwzqtonlrrpst-kldrqjoasa-j
  • molecular-weight:
    • 1713.036

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

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