Difference between revisions of "CARBODEHYDRAT-RXN"
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(Created page with "Category:reaction == Reaction R147-RXN == * direction: ** left-to-right * common-name: ** acireductone dioxygenase [iron(ii)-requiring] * ec-number: ** [http://enzyme.expa...") |
(Created page with "Category:reaction == Reaction GCVP-RXN == * direction: ** reversible * common-name: ** glycine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4....") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction GCVP-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** reversible |
* common-name: | * common-name: | ||
| − | ** | + | ** glycine decarboxylase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4.2] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ08557]] |
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ06358]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY | + | * [[GLYCLEAV-PWY]], glycine cleavage: |
| − | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
| + | * [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: | ||
| + | ** '''2''' reactions found over '''1''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24307 24307] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425] |
| − | {{#set: direction= | + | * UNIPROT: |
| − | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P26969 P26969] |
| − | {{#set: ec-number=ec-1. | + | ** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1] |
| − | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86] |
| − | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0] |
| − | {{#set: reconstruction category=annotation}} | + | ** [http://www.uniprot.org/uniprot/P23378 P23378] |
| − | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://www.uniprot.org/uniprot/P33195 P33195] |
| + | ** [http://www.uniprot.org/uniprot/O80988 O80988] | ||
| + | ** [http://www.uniprot.org/uniprot/Q94B78 Q94B78] | ||
| + | ** [http://www.uniprot.org/uniprot/O32915 O32915] | ||
| + | ** [http://www.uniprot.org/uniprot/O22575 O22575] | ||
| + | {{#set: direction=reversible}} | ||
| + | {{#set: common-name=glycine decarboxylase}} | ||
| + | {{#set: ec-number=ec-1.4.4.2}} | ||
| + | {{#set: nb gene associated=2}} | ||
| + | {{#set: nb pathway associated=2}} | ||
| + | {{#set: reconstruction category=annotation|orthology}} | ||
| + | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:01, 14 January 2021
Contents
Reaction GCVP-RXN
- direction:
- reversible
- common-name:
- glycine decarboxylase
- ec-number:
Reaction formula
- 1 GLY[c] + 1 PROTEIN-LIPOYLLYSINE[c] + 1 PROTON[c] <=> 1 AMINOMETHYLDIHYDROLIPOYL-GCVH[c] + 1 CARBON-DIOXIDE[c]
Gene(s) associated with this reaction
- Gene: SJ08557
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ06358
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- GLYCLEAV-PWY, glycine cleavage:
- 3 reactions found over 3 reactions in the full pathway
- GLYCINE-SYN2-PWY, glycine biosynthesis II:
- 2 reactions found over 1 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
