Difference between revisions of "CARBODEHYDRAT-RXN"

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(Created page with "Category:reaction == Reaction FPPSYN-RXN == * direction: ** left-to-right * common-name: ** farnesyl diphosphate synthase ** geranyltranstransferase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction CARBODEHYDRAT-RXN == * direction: ** reversible * common-name: ** carbonate dehydratase ** carbonic anhydrase * ec-number: ** [http://enzyme....")
 
(4 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FPPSYN-RXN ==
+
== Reaction CARBODEHYDRAT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** farnesyl diphosphate synthase
+
** carbonate dehydratase
−
** geranyltranstransferase
+
** carbonic anhydrase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10]
+
** [http://enzyme.expasy.org/EC/4.2.1.1 ec-4.2.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[H2CO3]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ20033]]
+
* Gene: [[SJ07324]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17783]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09945]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10346]]
+
* Gene: [[SJ18142]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02885]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13238]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ00173]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12311]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07587]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18135]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13240]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18140]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07765]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07762]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21158]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22175]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18141]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 34: Line 87:
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6859]], all-trans-farnesol biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7736]], stellatic acid biosynthesis:
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7721]], methyl phomopsenoate biosynthesis:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00132 R00132]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
+
** [http://www.uniprot.org/uniprot/P07450 P07450]
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
+
** [http://www.uniprot.org/uniprot/P07452 P07452]
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
+
** [http://www.uniprot.org/uniprot/P13634 P13634]
−
** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
+
** [http://www.uniprot.org/uniprot/P08060 P08060]
−
** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
+
** [http://www.uniprot.org/uniprot/P16016 P16016]
−
** [http://www.uniprot.org/uniprot/P45204 P45204]
+
** [http://www.uniprot.org/uniprot/P20507 P20507]
−
** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
+
** [http://www.uniprot.org/uniprot/P16015 P16015]
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
+
** [http://www.uniprot.org/uniprot/P40881 P40881]
−
** [http://www.uniprot.org/uniprot/P22939 P22939]
+
** [http://www.uniprot.org/uniprot/Q7LZP1 Q7LZP1]
−
** [http://www.uniprot.org/uniprot/Q08291 Q08291]
+
** [http://www.uniprot.org/uniprot/Q8X938 Q8X938]
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
+
** [http://www.uniprot.org/uniprot/P00921 P00921]
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
+
** [http://www.uniprot.org/uniprot/P00917 P00917]
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
+
** [http://www.uniprot.org/uniprot/P00915 P00915]
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
+
** [http://www.uniprot.org/uniprot/P00918 P00918]
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
+
** [http://www.uniprot.org/uniprot/P07451 P07451]
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
+
** [http://www.uniprot.org/uniprot/P22748 P22748]
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
+
** [http://www.uniprot.org/uniprot/P35218 P35218]
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
+
** [http://www.uniprot.org/uniprot/P43166 P43166]
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
+
** [http://www.uniprot.org/uniprot/P00916 P00916]
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
+
** [http://www.uniprot.org/uniprot/P00920 P00920]
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
+
** [http://www.uniprot.org/uniprot/P00922 P00922]
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
+
** [http://www.uniprot.org/uniprot/O24855 O24855]
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
+
** [http://www.uniprot.org/uniprot/Q9PIQ7 Q9PIQ7]
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
+
** [http://www.uniprot.org/uniprot/P14141 P14141]
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
+
** [http://www.uniprot.org/uniprot/P43165 P43165]
−
** [http://www.uniprot.org/uniprot/O14230 O14230]
+
** [http://www.uniprot.org/uniprot/P07630 P07630]
 +
** [http://www.uniprot.org/uniprot/P27139 P27139]
 +
** [http://www.uniprot.org/uniprot/P35219 P35219]
 +
** [http://www.uniprot.org/uniprot/Q7M317 Q7M317]
 +
** [http://www.uniprot.org/uniprot/Q7M316 Q7M316]
 +
** [http://www.uniprot.org/uniprot/P0ABE9 P0ABE9]
 +
** [http://www.uniprot.org/uniprot/P18761 P18761]
 +
** [http://www.uniprot.org/uniprot/P17067 P17067]
 +
** [http://www.uniprot.org/uniprot/P23589 P23589]
 +
** [http://www.uniprot.org/uniprot/P24258 P24258]
 +
** [http://www.uniprot.org/uniprot/P27140 P27140]
 +
** [http://www.uniprot.org/uniprot/P27134 P27134]
 +
** [http://www.uniprot.org/uniprot/P46510 P46510]
 +
** [http://www.uniprot.org/uniprot/P46511 P46511]
 +
** [http://www.uniprot.org/uniprot/P46512 P46512]
 +
** [http://www.uniprot.org/uniprot/P46281 P46281]
 +
** [http://www.uniprot.org/uniprot/P18915 P18915]
 +
** [http://www.uniprot.org/uniprot/Q41728 Q41728]
 +
** [http://www.uniprot.org/uniprot/Q41729 Q41729]
 +
** [http://www.uniprot.org/uniprot/P27141 P27141]
 +
** [http://www.uniprot.org/uniprot/Q40628 Q40628]
 +
** [http://www.uniprot.org/uniprot/Q08056 Q08056]
 +
** [http://www.uniprot.org/uniprot/P40880 P40880]
 +
** [http://www.uniprot.org/uniprot/Q39588 Q39588]
 +
** [http://www.uniprot.org/uniprot/P93108 P93108]
 +
** [http://www.uniprot.org/uniprot/Q92051 Q92051]
 +
** [http://www.uniprot.org/uniprot/O04855 O04855]
 +
** [http://www.uniprot.org/uniprot/Q41088 Q41088]
 +
** [http://www.uniprot.org/uniprot/Q41089 Q41089]
 +
** [http://www.uniprot.org/uniprot/P46513 P46513]
 +
** [http://www.uniprot.org/uniprot/O04846 O04846]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=farnesyl diphosphate synthase|geranyltranstransferase}}
+
{{#set: common-name=carbonate dehydratase|carbonic anhydrase}}
−
{{#set: ec-number=ec-2.5.1.10}}
+
{{#set: ec-number=ec-4.2.1.1}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=14}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction CARBODEHYDRAT-RXN

  • direction:
    • reversible
  • common-name:
    • carbonate dehydratase
    • carbonic anhydrase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CARBODEHYDRAT-RXN&oldid=140480"