Difference between revisions of "CARBODEHYDRAT-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10703 RXN-10703] == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydroge...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONE-PEROXIDASE-RXN GLUTATHIONE-PEROXIDASE-RXN] == * direction: ** left-to-right * common-na...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10703 RXN-10703] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONE-PEROXIDASE-RXN GLUTATHIONE-PEROXIDASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-hydroxyacyl-coa dehydrogenase
+
** glutathione peroxidase
−
** opc4-3-hydroxyacyl-coa dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
+
** [http://enzyme.expasy.org/EC/1.11.1.9 ec-1.11.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-11527]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD-11528]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 2 [[GLUTATHIONE]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''=>''' 1 [[OXIDIZED-GLUTATHIONE]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ07211]]
+
* Gene: [[SJ06139]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16746]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03584]]
+
* Gene: [[SJ20157]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02437]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17873]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ17348]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08182]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ16180]]
+
* Gene: [[SJ01572]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ21390]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12557]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ16470]]
+
* Gene: [[SJ21059]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ01444]]
+
* Gene: [[SJ14909]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12662]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
+
* [[DETOX1-PWY-1]], reactive oxygen species degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1]
−
** '''16''' reactions found over '''19''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-4081]], glutathione-peroxide redox reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4081 PWY-4081]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16834 16834]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00274 R00274]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q7M355 Q7M355]
 +
** [http://www.uniprot.org/uniprot/P18283 P18283]
 +
** [http://www.uniprot.org/uniprot/P46412 P46412]
 +
** [http://www.uniprot.org/uniprot/Q64625 Q64625]
 +
** [http://www.uniprot.org/uniprot/P0A0T5 P0A0T5]
 +
** [http://www.uniprot.org/uniprot/P0A0T4 P0A0T4]
 +
** [http://www.uniprot.org/uniprot/P22352 P22352]
 +
** [http://www.uniprot.org/uniprot/P23764 P23764]
 +
** [http://www.uniprot.org/uniprot/P37141 P37141]
 +
** [http://www.uniprot.org/uniprot/P00435 P00435]
 +
** [http://www.uniprot.org/uniprot/P07203 P07203]
 +
** [http://www.uniprot.org/uniprot/P11352 P11352]
 +
** [http://www.uniprot.org/uniprot/P04041 P04041]
 +
** [http://www.uniprot.org/uniprot/P11909 P11909]
 +
** [http://www.uniprot.org/uniprot/P30708 P30708]
 +
** [http://www.uniprot.org/uniprot/P67878 P67878]
 +
** [http://www.uniprot.org/uniprot/P28714 P28714]
 +
** [http://www.uniprot.org/uniprot/P30710 P30710]
 +
** [http://www.uniprot.org/uniprot/Q06652 Q06652]
 +
** [http://www.uniprot.org/uniprot/P38143 P38143]
 +
** [http://www.uniprot.org/uniprot/P40581 P40581]
 +
** [http://www.uniprot.org/uniprot/Q38703 Q38703]
 +
** [http://www.uniprot.org/uniprot/P35666 P35666]
 +
** [http://www.uniprot.org/uniprot/P67877 P67877]
 +
** [http://www.uniprot.org/uniprot/Q7M448 Q7M448]
 +
** [http://www.uniprot.org/uniprot/P73824 P73824]
 +
** [http://www.uniprot.org/uniprot/Q9SZ54 Q9SZ54]
 +
** [http://www.uniprot.org/uniprot/O24296 O24296]
 +
** [http://www.uniprot.org/uniprot/O24032 O24032]
 +
** [http://www.uniprot.org/uniprot/O22448 O22448]
 +
** [http://www.uniprot.org/uniprot/O23968 O23968]
 +
** [http://www.uniprot.org/uniprot/O23970 O23970]
 +
** [http://www.uniprot.org/uniprot/Q98234 Q98234]
 +
** [http://www.uniprot.org/uniprot/O59858 O59858]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase|opc4-3-hydroxyacyl-coa dehydrogenase}}
+
{{#set: common-name=glutathione peroxidase}}
−
{{#set: ec-number=ec-1.1.1.35}}
+
{{#set: ec-number=ec-1.11.1.9}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=11}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction GLUTATHIONE-PEROXIDASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • glutathione peroxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • DETOX1-PWY-1, reactive oxygen species degradation: DETOX1-PWY-1
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-4081, glutathione-peroxide redox reactions: PWY-4081
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CARBODEHYDRAT-RXN&oldid=36304"