Difference between revisions of "CARBODEHYDRAT-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONE-PEROXIDASE-RXN GLUTATHIONE-PEROXIDASE-RXN] == * direction: ** left-to-right * common-na...")
(Created page with "Category:reaction == Reaction FPPSYN-RXN == * direction: ** left-to-right * common-name: ** farnesyl diphosphate synthase ** geranyltranstransferase * ec-number: ** [http:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONE-PEROXIDASE-RXN GLUTATHIONE-PEROXIDASE-RXN] ==
+
== Reaction FPPSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glutathione peroxidase
+
** farnesyl diphosphate synthase
 +
** geranyltranstransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.11.1.9 ec-1.11.1.9]
+
** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[GLUTATHIONE]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''=>''' 1 [[OXIDIZED-GLUTATHIONE]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ06139]]
+
* Gene: [[SJ20033]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16746]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09945]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20157]]
+
* Gene: [[SJ10346]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02437]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17873]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08182]]
+
* Gene: [[SJ02885]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ01572]]
+
* Gene: [[SJ00173]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12557]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14909]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12662]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[DETOX1-PWY-1]], reactive oxygen species degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1]
+
* [[PWY-6859]], all-trans-farnesol biosynthesis:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-4081]], glutathione-peroxide redox reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4081 PWY-4081]
+
* [[PWY-7736]], stellatic acid biosynthesis:
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7721]], methyl phomopsenoate biosynthesis:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16834 16834]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00274 R00274]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M355 Q7M355]
+
** [http://www.uniprot.org/uniprot/P08524 P08524]
−
** [http://www.uniprot.org/uniprot/P18283 P18283]
+
** [http://www.uniprot.org/uniprot/P05369 P05369]
−
** [http://www.uniprot.org/uniprot/P46412 P46412]
+
** [http://www.uniprot.org/uniprot/P14324 P14324]
−
** [http://www.uniprot.org/uniprot/Q64625 Q64625]
+
** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
−
** [http://www.uniprot.org/uniprot/P0A0T5 P0A0T5]
+
** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
−
** [http://www.uniprot.org/uniprot/P0A0T4 P0A0T4]
+
** [http://www.uniprot.org/uniprot/P45204 P45204]
−
** [http://www.uniprot.org/uniprot/P22352 P22352]
+
** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
−
** [http://www.uniprot.org/uniprot/P23764 P23764]
+
** [http://www.uniprot.org/uniprot/P49350 P49350]
−
** [http://www.uniprot.org/uniprot/P37141 P37141]
+
** [http://www.uniprot.org/uniprot/P22939 P22939]
−
** [http://www.uniprot.org/uniprot/P00435 P00435]
+
** [http://www.uniprot.org/uniprot/Q08291 Q08291]
−
** [http://www.uniprot.org/uniprot/P07203 P07203]
+
** [http://www.uniprot.org/uniprot/P49349 P49349]
−
** [http://www.uniprot.org/uniprot/P11352 P11352]
+
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
−
** [http://www.uniprot.org/uniprot/P04041 P04041]
+
** [http://www.uniprot.org/uniprot/P49351 P49351]
−
** [http://www.uniprot.org/uniprot/P11909 P11909]
+
** [http://www.uniprot.org/uniprot/P49352 P49352]
−
** [http://www.uniprot.org/uniprot/P30708 P30708]
+
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
−
** [http://www.uniprot.org/uniprot/P67878 P67878]
+
** [http://www.uniprot.org/uniprot/O24241 O24241]
−
** [http://www.uniprot.org/uniprot/P28714 P28714]
+
** [http://www.uniprot.org/uniprot/O24242 O24242]
−
** [http://www.uniprot.org/uniprot/P30710 P30710]
+
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
−
** [http://www.uniprot.org/uniprot/Q06652 Q06652]
+
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
−
** [http://www.uniprot.org/uniprot/P38143 P38143]
+
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
−
** [http://www.uniprot.org/uniprot/P40581 P40581]
+
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
−
** [http://www.uniprot.org/uniprot/Q38703 Q38703]
+
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
−
** [http://www.uniprot.org/uniprot/P35666 P35666]
+
** [http://www.uniprot.org/uniprot/P49353 P49353]
−
** [http://www.uniprot.org/uniprot/P67877 P67877]
+
** [http://www.uniprot.org/uniprot/O04882 O04882]
−
** [http://www.uniprot.org/uniprot/Q7M448 Q7M448]
+
** [http://www.uniprot.org/uniprot/O65004 O65004]
−
** [http://www.uniprot.org/uniprot/P73824 P73824]
+
** [http://www.uniprot.org/uniprot/O14230 O14230]
−
** [http://www.uniprot.org/uniprot/Q9SZ54 Q9SZ54]
 
−
** [http://www.uniprot.org/uniprot/O24296 O24296]
 
−
** [http://www.uniprot.org/uniprot/O24032 O24032]
 
−
** [http://www.uniprot.org/uniprot/O22448 O22448]
 
−
** [http://www.uniprot.org/uniprot/O23968 O23968]
 
−
** [http://www.uniprot.org/uniprot/O23970 O23970]
 
−
** [http://www.uniprot.org/uniprot/Q98234 Q98234]
 
−
** [http://www.uniprot.org/uniprot/O59858 O59858]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutathione peroxidase}}
+
{{#set: common-name=farnesyl diphosphate synthase|geranyltranstransferase}}
−
{{#set: ec-number=ec-1.11.1.9}}
+
{{#set: ec-number=ec-2.5.1.10}}
−
{{#set: nb gene associated=11}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:39, 18 December 2020

Reaction FPPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • farnesyl diphosphate synthase
    • geranyltranstransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6859, all-trans-farnesol biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis:
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered):
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CARBODEHYDRAT-RXN&oldid=49296"