Difference between revisions of "CARBPSYN-RXN"

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(Created page with "Category:reaction == Reaction ADENYL-KIN-RXN == * direction: ** left-to-right * common-name: ** adenylate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.3 ec-2....")
(Created page with "Category:reaction == Reaction CARBPSYN-RXN == * direction: ** left-to-right * common-name: ** carbamoyl phosphate synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ADENYL-KIN-RXN ==
+
== Reaction CARBPSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** adenylate kinase
+
** carbamoyl phosphate synthetase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.4.3 ec-2.7.4.3]
+
** [http://enzyme.expasy.org/EC/6.3.5.5 ec-6.3.5.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 2 [[ADP]][c]
+
* 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ17851]]
−
* Gene: [[SJ12510]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13446]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01032]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04502]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18341]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21099]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21967]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08159]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20076]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13448]]
+
* Gene: [[SJ15949]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12499]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04989]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10682]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ14895]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02240]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00789]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15367]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00793]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08980]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis:
+
* [[PWY-7400]], L-arginine biosynthesis IV (archaea):
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine):
 +
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5686]], UMP biosynthesis I:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR96485
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18634 18634]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00127 R00127]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05081 P05081]
+
** [http://www.uniprot.org/uniprot/P08955 P08955]
−
** [http://www.uniprot.org/uniprot/P20425 P20425]
+
** [http://www.uniprot.org/uniprot/P13258 P13258]
−
** [http://www.uniprot.org/uniprot/P08166 P08166]
+
** [http://www.uniprot.org/uniprot/P38099 P38099]
−
** [http://www.uniprot.org/uniprot/P38372 P38372]
+
** [http://www.uniprot.org/uniprot/P27708 P27708]
−
** [http://www.uniprot.org/uniprot/O27699 O27699]
+
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
−
** [http://www.uniprot.org/uniprot/O29581 O29581]
+
** [http://www.uniprot.org/uniprot/O28994 O28994]
−
** [http://www.uniprot.org/uniprot/O59443 O59443]
+
** [http://www.uniprot.org/uniprot/P57689 P57689]
−
** [http://www.uniprot.org/uniprot/Q9YDD2 Q9YDD2]
+
** [http://www.uniprot.org/uniprot/P38098 P38098]
−
** [http://www.uniprot.org/uniprot/Q9UZN1 Q9UZN1]
+
** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
−
** [http://www.uniprot.org/uniprot/P58117 P58117]
+
** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
−
** [http://www.uniprot.org/uniprot/Q9PHM8 Q9PHM8]
+
** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
−
** [http://www.uniprot.org/uniprot/P54819 P54819]
+
** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
−
** [http://www.uniprot.org/uniprot/O66490 O66490]
+
** [http://www.uniprot.org/uniprot/P25993 P25993]
−
** [http://www.uniprot.org/uniprot/Q9V1V9 Q9V1V9]
+
** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
−
** [http://www.uniprot.org/uniprot/P49973 P49973]
+
** [http://www.uniprot.org/uniprot/P25994 P25994]
−
** [http://www.uniprot.org/uniprot/P24323 P24323]
+
** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
−
** [http://www.uniprot.org/uniprot/P47417 P47417]
+
** [http://www.uniprot.org/uniprot/O25577 O25577]
−
** [http://www.uniprot.org/uniprot/Q9HPA7 Q9HPA7]
+
** [http://www.uniprot.org/uniprot/P52557 P52557]
−
** [http://www.uniprot.org/uniprot/P29410 P29410]
+
** [http://www.uniprot.org/uniprot/P46537 P46537]
−
** [http://www.uniprot.org/uniprot/P16304 P16304]
+
** [http://www.uniprot.org/uniprot/P18185 P18185]
−
** [http://www.uniprot.org/uniprot/P00570 P00570]
+
** [http://www.uniprot.org/uniprot/P07259 P07259]
−
** [http://www.uniprot.org/uniprot/P27142 P27142]
+
** [http://www.uniprot.org/uniprot/P20054 P20054]
−
** [http://www.uniprot.org/uniprot/P07170 P07170]
+
** [http://www.uniprot.org/uniprot/P05990 P05990]
−
** [http://www.uniprot.org/uniprot/P12115 P12115]
+
** [http://www.uniprot.org/uniprot/P14845 P14845]
−
** [http://www.uniprot.org/uniprot/P69441 P69441]
+
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
−
** [http://www.uniprot.org/uniprot/P00568 P00568]
+
** [http://www.uniprot.org/uniprot/Q92115 Q92115]
−
** [http://www.uniprot.org/uniprot/P10772 P10772]
+
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
−
** [http://www.uniprot.org/uniprot/P00571 P00571]
+
** [http://www.uniprot.org/uniprot/P03965 P03965]
−
** [http://www.uniprot.org/uniprot/P00569 P00569]
+
** [http://www.uniprot.org/uniprot/P07258 P07258]
−
** [http://www.uniprot.org/uniprot/P10251 P10251]
+
** [http://www.uniprot.org/uniprot/P00968 P00968]
−
** [http://www.uniprot.org/uniprot/P43417 P43417]
+
** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
−
** [http://www.uniprot.org/uniprot/P49974 P49974]
+
** [http://www.uniprot.org/uniprot/P93345 P93345]
−
** [http://www.uniprot.org/uniprot/P33107 P33107]
+
** [http://www.uniprot.org/uniprot/Q27732 Q27732]
−
** [http://www.uniprot.org/uniprot/P27143 P27143]
+
** [http://www.uniprot.org/uniprot/Q27448 Q27448]
−
** [http://www.uniprot.org/uniprot/P26364 P26364]
+
** [http://www.uniprot.org/uniprot/O50236 O50236]
−
** [http://www.uniprot.org/uniprot/P33075 P33075]
+
** [http://www.uniprot.org/uniprot/O94313 O94313]
−
** [http://www.uniprot.org/uniprot/P35140 P35140]
+
** [http://www.uniprot.org/uniprot/Q59968 Q59968]
−
** [http://www.uniprot.org/uniprot/P35141 P35141]
+
** [http://www.uniprot.org/uniprot/Q59969 Q59969]
−
** [http://www.uniprot.org/uniprot/P39068 P39068]
+
** [http://www.uniprot.org/uniprot/O50301 O50301]
−
** [http://www.uniprot.org/uniprot/P34346 P34346]
+
** [http://www.uniprot.org/uniprot/O50302 O50302]
−
** [http://www.uniprot.org/uniprot/P43188 P43188]
 
−
** [http://www.uniprot.org/uniprot/P69344 P69344]
 
−
** [http://www.uniprot.org/uniprot/P0A0U6 P0A0U6]
 
−
** [http://www.uniprot.org/uniprot/P49979 P49979]
 
−
** [http://www.uniprot.org/uniprot/Q50299 Q50299]
 
−
** [http://www.uniprot.org/uniprot/P43412 P43412]
 
−
** [http://www.uniprot.org/uniprot/P72641 P72641]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=adenylate kinase}}
+
{{#set: common-name=carbamoyl phosphate synthetase}}
−
{{#set: ec-number=ec-2.7.4.3}}
+
{{#set: ec-number=ec-6.3.5.5}}
−
{{#set: nb gene associated=19}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction CARBPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • carbamoyl phosphate synthetase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7400, L-arginine biosynthesis IV (archaea):
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine):
    • 5 reactions found over 4 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CARBPSYN-RXN&oldid=140795"