Difference between revisions of "CATAL-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11026 RXN-11026] == * direction: ** left-to-right * common-name: ** acyl-coa oxidase * ec-numbe...")
(Created page with "Category:reaction == Reaction CATAL-RXN == * direction: ** left-to-right * common-name: ** catalase * ec-number: ** [http://enzyme.expasy.org/EC/1.11.1.6 ec-1.11.1.6] ** [...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11026 RXN-11026] ==
+
== Reaction CATAL-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acyl-coa oxidase
+
** catalase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
+
** [http://enzyme.expasy.org/EC/1.11.1.6 ec-1.11.1.6]
 +
** [http://enzyme.expasy.org/EC/1.11.1.21 ec-1.11.1.21]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
+
* 2 [[HYDROGEN-PEROXIDE]][c] '''=>''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07452]]
+
* Gene: [[SJ03402]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07451]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13468]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03090]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19669]]
 
−
** Category: [[orthology]]
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
+
* [[PWY-5506]], methanol oxidation to formaldehyde IV:
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7288]], fatty acid β-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288]
+
* [[DETOX1-PWY-1]], reactive oxygen species degradation:
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
+
* [[DETOX1-PWY]], superoxide radicals degradation:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR96455
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=38960 38960]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20310 20310]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00009 R00009]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O65202 O65202]
+
** [http://www.uniprot.org/uniprot/P11934 P11934]
−
** [http://www.uniprot.org/uniprot/O65201 O65201]
+
** [http://www.uniprot.org/uniprot/P24270 P24270]
−
** [http://www.uniprot.org/uniprot/O23977 O23977]
+
** [http://www.uniprot.org/uniprot/P21179 P21179]
−
** [http://www.uniprot.org/uniprot/P13711 P13711]
+
** [http://www.uniprot.org/uniprot/P24168 P24168]
−
** [http://www.uniprot.org/uniprot/P34355 P34355]
+
** [http://www.uniprot.org/uniprot/Q7M184 Q7M184]
−
** [http://www.uniprot.org/uniprot/P07872 P07872]
+
** [http://www.uniprot.org/uniprot/P0A327 P0A327]
−
** [http://www.uniprot.org/uniprot/P11356 P11356]
+
** [http://www.uniprot.org/uniprot/P45737 P45737]
−
** [http://www.uniprot.org/uniprot/P06598 P06598]
+
** [http://www.uniprot.org/uniprot/P42321 P42321]
−
** [http://www.uniprot.org/uniprot/Q00468 Q00468]
+
** [http://www.uniprot.org/uniprot/O28050 O28050]
−
** [http://www.uniprot.org/uniprot/Q15067 Q15067]
+
** [http://www.uniprot.org/uniprot/Q59337 Q59337]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/P77872 P77872]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388]
+
** [http://www.uniprot.org/uniprot/P00432 P00432]
−
* PIR:
+
** [http://www.uniprot.org/uniprot/P15202 P15202]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942]
+
** [http://www.uniprot.org/uniprot/P06115 P06115]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942]
+
** [http://www.uniprot.org/uniprot/P07820 P07820]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095]
+
** [http://www.uniprot.org/uniprot/P17750 P17750]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563]
+
** [http://www.uniprot.org/uniprot/P13029 P13029]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX]
+
** [http://www.uniprot.org/uniprot/P17336 P17336]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2]
+
** [http://www.uniprot.org/uniprot/P04040 P04040]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM]
+
** [http://www.uniprot.org/uniprot/P25890 P25890]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX]
+
** [http://www.uniprot.org/uniprot/P04762 P04762]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4]
+
** [http://www.uniprot.org/uniprot/P29756 P29756]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5]
+
** [http://www.uniprot.org/uniprot/P44390 P44390]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1]
+
** [http://www.uniprot.org/uniprot/P42234 P42234]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2]
+
** [http://www.uniprot.org/uniprot/Q9JRF5 Q9JRF5]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722]
+
** [http://www.uniprot.org/uniprot/P94377 P94377]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224]
+
** [http://www.uniprot.org/uniprot/Q9ZKX5 Q9ZKX5]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418]
+
** [http://www.uniprot.org/uniprot/Q59296 Q59296]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120]
+
** [http://www.uniprot.org/uniprot/P55306 P55306]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121]
+
** [http://www.uniprot.org/uniprot/P26901 P26901]
 +
** [http://www.uniprot.org/uniprot/P14412 P14412]
 +
** [http://www.uniprot.org/uniprot/P07145 P07145]
 +
** [http://www.uniprot.org/uniprot/P17598 P17598]
 +
** [http://www.uniprot.org/uniprot/Q41136 Q41136]
 +
** [http://www.uniprot.org/uniprot/P30567 P30567]
 +
** [http://www.uniprot.org/uniprot/P30263 P30263]
 +
** [http://www.uniprot.org/uniprot/P29422 P29422]
 +
** [http://www.uniprot.org/uniprot/P30266 P30266]
 +
** [http://www.uniprot.org/uniprot/P37743 P37743]
 +
** [http://www.uniprot.org/uniprot/P33569 P33569]
 +
** [http://www.uniprot.org/uniprot/P18123 P18123]
 +
** [http://www.uniprot.org/uniprot/P55303 P55303]
 +
** [http://www.uniprot.org/uniprot/Q01297 Q01297]
 +
** [http://www.uniprot.org/uniprot/P49318 P49318]
 +
** [http://www.uniprot.org/uniprot/P18122 P18122]
 +
** [http://www.uniprot.org/uniprot/P49315 P49315]
 +
** [http://www.uniprot.org/uniprot/Q27710 Q27710]
 +
** [http://www.uniprot.org/uniprot/P45739 P45739]
 +
** [http://www.uniprot.org/uniprot/P0A323 P0A323]
 +
** [http://www.uniprot.org/uniprot/P55307 P55307]
 +
** [http://www.uniprot.org/uniprot/P55308 P55308]
 +
** [http://www.uniprot.org/uniprot/P55305 P55305]
 +
** [http://www.uniprot.org/uniprot/P50979 P50979]
 +
** [http://www.uniprot.org/uniprot/Q55110 Q55110]
 +
** [http://www.uniprot.org/uniprot/P12365 P12365]
 +
** [http://www.uniprot.org/uniprot/P73911 P73911]
 +
** [http://www.uniprot.org/uniprot/P77038 P77038]
 +
** [http://www.uniprot.org/uniprot/P25819 P25819]
 +
** [http://www.uniprot.org/uniprot/O48562 O48562]
 +
** [http://www.uniprot.org/uniprot/Q43206 Q43206]
 +
** [http://www.uniprot.org/uniprot/O22472 O22472]
 +
** [http://www.uniprot.org/uniprot/P30265 P30265]
 +
** [http://www.uniprot.org/uniprot/P48351 P48351]
 +
** [http://www.uniprot.org/uniprot/P48352 P48352]
 +
** [http://www.uniprot.org/uniprot/Q39633 Q39633]
 +
** [http://www.uniprot.org/uniprot/Q39634 Q39634]
 +
** [http://www.uniprot.org/uniprot/P32290 P32290]
 +
** [http://www.uniprot.org/uniprot/O81336 O81336]
 +
** [http://www.uniprot.org/uniprot/O81337 O81337]
 +
** [http://www.uniprot.org/uniprot/P49317 P49317]
 +
** [http://www.uniprot.org/uniprot/Q27487 Q27487]
 +
** [http://www.uniprot.org/uniprot/Q8MYL7 Q8MYL7]
 +
** [http://www.uniprot.org/uniprot/Q9Z598 Q9Z598]
 +
** [http://www.uniprot.org/uniprot/O61235 O61235]
 +
** [http://www.uniprot.org/uniprot/O33613 O33613]
 +
** [http://www.uniprot.org/uniprot/P77948 P77948]
 +
** [http://www.uniprot.org/uniprot/O73955 O73955]
 +
** [http://www.uniprot.org/uniprot/O59651 O59651]
 +
** [http://www.uniprot.org/uniprot/O31066 O31066]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acyl-coa oxidase}}
+
{{#set: common-name=catalase}}
−
{{#set: ec-number=ec-1.3.3.6}}
+
{{#set: ec-number=ec-1.11.1.21|ec-1.11.1.6}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction CATAL-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5506, methanol oxidation to formaldehyde IV:
    • 1 reactions found over 2 reactions in the full pathway
  • DETOX1-PWY-1, reactive oxygen species degradation:
    • 4 reactions found over 4 reactions in the full pathway
  • DETOX1-PWY, superoxide radicals degradation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CATAL-RXN&oldid=140700"