Difference between revisions of "CDP-GLYCEROL-PYROPHOSPHATASE-RXN"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAMKIN-RXN PYRAMKIN-RXN] == * direction: ** left-to-right * common-name: ** pyridoxamine kinase *...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] == * direction: ** left-to-right * common-name: ** hexokinase ** glucoki...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** hexokinase |
+ | ** glucokinase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2.7.1. | + | ** [http://enzyme.expasy.org/EC/2.7.1.1 ec-2.7.1.1] |
+ | ** [http://enzyme.expasy.org/EC/2.7.1.2 ec-2.7.1.2] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ATP]][c] '''+''' 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[Glucopyranose]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[D-glucopyranose-6-phosphate]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ04919]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ12224]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
+ | * Gene: [[SJ19906]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''5''' reactions found over ''' | + | * [[PWY-2723]], trehalose degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2723 PWY-2723] |
− | * [[PWY- | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
− | ** '''9''' reactions found over ''' | + | * [[PWY0-1182]], trehalose degradation II (cytosolic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1182 PWY0-1182] |
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-5661]], GDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY] | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238] | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY] | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-2722]], trehalose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2722 PWY-2722] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[TREDEGLOW-PWY]], trehalose degradation I (low osmolarity): [http://metacyc.org/META/NEW-IMAGE?object=TREDEGLOW-PWY TREDEGLOW-PWY] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-621]], sucrose degradation III (sucrose invertase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-621 PWY-621] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
− | |||
== External links == | == External links == | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01786 R01786] | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00299 R00299] | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17825 17825] |
− | * | + | * UNIPROT: |
− | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/P0A6V8 P0A6V8] |
+ | ** [http://www.uniprot.org/uniprot/P21908 P21908] | ||
+ | ** [http://www.uniprot.org/uniprot/P64254 P64254] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8XDH5 Q8XDH5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8XDH4 Q8XDH4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CE25 Q9CE25] | ||
+ | ** [http://www.uniprot.org/uniprot/P52792 P52792] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9V2Z6 Q9V2Z6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M537 Q7M537] | ||
+ | ** [http://www.uniprot.org/uniprot/P17709 P17709] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04409 Q04409] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92407 Q92407] | ||
+ | ** [http://www.uniprot.org/uniprot/O31392 O31392] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=glucokinase|hexokinase}} |
− | {{#set: ec-number=ec-2.7.1. | + | {{#set: ec-number=ec-2.7.1.1|ec-2.7.1.2}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=14}} |
− | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=annotation|orthology}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:32, 27 August 2019
Contents
Reaction GLUCOKIN-RXN
- direction:
- left-to-right
- common-name:
- hexokinase
- glucokinase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 Glucopyranose[c] => 1 ADP[c] + 1 D-glucopyranose-6-phosphate[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ04919
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ12224
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ19906
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-2723, trehalose degradation V: PWY-2723
- 2 reactions found over 3 reactions in the full pathway
- PWY0-1182, trehalose degradation II (cytosolic): PWY0-1182
- 2 reactions found over 2 reactions in the full pathway
- P122-PWY, heterolactic fermentation: P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- PWY-5661, GDP-glucose biosynthesis: PWY-5661
- 2 reactions found over 3 reactions in the full pathway
- GLYCOCAT-PWY, glycogen degradation I: GLYCOCAT-PWY
- 6 reactions found over 8 reactions in the full pathway
- PWY-7238, sucrose biosynthesis II: PWY-7238
- 5 reactions found over 8 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt: P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- GLUCOSE1PMETAB-PWY, glucose and glucose-1-phosphate degradation: GLUCOSE1PMETAB-PWY
- 3 reactions found over 5 reactions in the full pathway
- PWY-7385, 1,3-propanediol biosynthesis (engineered): PWY-7385
- 7 reactions found over 9 reactions in the full pathway
- PWY-2722, trehalose degradation IV: PWY-2722
- 1 reactions found over 3 reactions in the full pathway
- TREDEGLOW-PWY, trehalose degradation I (low osmolarity): TREDEGLOW-PWY
- 1 reactions found over 2 reactions in the full pathway
- PWY-621, sucrose degradation III (sucrose invertase): PWY-621
- 3 reactions found over 4 reactions in the full pathway
- ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
- 10 reactions found over 11 reactions in the full pathway
- PWY-5514, UDP-N-acetyl-D-galactosamine biosynthesis II: PWY-5514
- 5 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- LIGAND-RXN:
- RHEA:
- UNIPROT: