Difference between revisions of "CHD-RXN"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction ExchangeSeed-Light == * direction: ** reversible == Reaction formula == * 1.0 Light[C-BOUNDARY] '''<=>''' 1.0 Light[e] == Gene(s) ass...") |
(Created page with "Category:reaction == Reaction CHD-RXN == * direction: ** reversible * common-name: ** choline dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.99.1 ec-1.1.99...") |
||
(One intermediate revision by one other user not shown) | |||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction CHD-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
+ | * common-name: | ||
+ | ** choline dehydrogenase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.1.99.1 ec-1.1.99.1] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[Acceptor]][c] '''+''' 1 [[CHOLINE]][c] '''<=>''' 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[Donor-H2]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
+ | * Gene: [[SJ12409]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ09287]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ06047]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ22552]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ07158]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR115763 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17436 17436] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01025 R01025] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P17444 P17444] | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
− | {{#set: nb gene associated= | + | {{#set: common-name=choline dehydrogenase}} |
− | {{#set: nb pathway associated= | + | {{#set: ec-number=ec-1.1.99.1}} |
− | {{#set: reconstruction category= | + | {{#set: nb gene associated=5}} |
− | {{#set: reconstruction tool= | + | {{#set: nb pathway associated=2}} |
− | {{#set: reconstruction comment= | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction source= | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:23, 18 March 2021
Contents
Reaction CHD-RXN
- direction:
- reversible
- common-name:
- choline dehydrogenase
- ec-number:
Reaction formula
- 1 Acceptor[c] + 1 CHOLINE[c] <=> 1 BETAINE_ALDEHYDE[c] + 1 Donor-H2[c]
Gene(s) associated with this reaction
- Gene: SJ12409
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ09287
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06047
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ22552
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ07158
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- BETSYN-PWY, glycine betaine biosynthesis I (Gram-negative bacteria):
- 2 reactions found over 2 reactions in the full pathway
- CHOLINE-BETAINE-ANA-PWY, choline degradation I:
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links