Difference between revisions of "CHOLANATE2"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MRNA-GUANYLYLTRANSFERASE-RXN MRNA-GUANYLYLTRANSFERASE-RXN] == * direction: ** left-to-right * commo...")
(Created page with "Category:gene == Gene SJ20435 == * transcription-direction: ** negative * right-end-position: ** 642232 * left-end-position: ** 627701 * centisome-position: ** 55.26933...")
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MRNA-GUANYLYLTRANSFERASE-RXN MRNA-GUANYLYLTRANSFERASE-RXN] ==
+
== Gene SJ20435 ==
−
* direction:
+
* transcription-direction:
−
** left-to-right
+
** negative
−
* common-name:
+
* right-end-position:
−
** mrna guanylyltransferase
+
** 642232
−
* ec-number:
+
* left-end-position:
−
** [http://enzyme.expasy.org/EC/2.7.7.50 ec-2.7.7.50]
+
** 627701
−
== Reaction formula ==
+
* centisome-position:
−
* 1 [[CPD-8630]][c] '''+''' 1 [[GTP]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[G5-pppR-mRNAs]][c] '''+''' 1 [[PPI]][c]
+
** 55.26933   
−
== Gene(s) associated with this reaction  ==
+
== Organism(s) associated with this gene  ==
−
* Gene: [[SJ05217]]
+
* [[S.japonica_carotenoid_curated]]
 +
== Reaction(s) associated ==
 +
* [[PROTEIN-KINASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
== Pathway(s)  ==
+
{{#set: transcription-direction=negative}}
−
* [[PWY-7375]], mRNA capping I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7375 PWY-7375]
+
{{#set: right-end-position=642232}}
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
{{#set: left-end-position=627701}}
−
== Reconstruction information  ==
+
{{#set: centisome-position=55.26933    }}
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
{{#set: nb reaction associated=1}}
−
== External links  ==
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03828 R03828]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P32094 P32094]
 
−
** [http://www.uniprot.org/uniprot/P33057 P33057]
 
−
** [http://www.uniprot.org/uniprot/O60942 O60942]
 
−
** [http://www.uniprot.org/uniprot/P04298 P04298]
 
−
** [http://www.uniprot.org/uniprot/P04318 P04318]
 
−
** [http://www.uniprot.org/uniprot/P25950 P25950]
 
−
** [http://www.uniprot.org/uniprot/P20979 P20979]
 
−
** [http://www.uniprot.org/uniprot/P11079 P11079]
 
−
** [http://www.uniprot.org/uniprot/Q01159 Q01159]
 
−
** [http://www.uniprot.org/uniprot/Q84424 Q84424]
 
−
** [http://www.uniprot.org/uniprot/Q98257 Q98257]
 
−
** [http://www.uniprot.org/uniprot/Q98268 Q98268]
 
−
** [http://www.uniprot.org/uniprot/P40997 P40997]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=mrna guanylyltransferase}}
 
−
{{#set: ec-number=ec-2.7.7.50}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:28, 27 August 2019

Gene SJ20435

  • transcription-direction:
    • negative
  • right-end-position:
    • 642232
  • left-end-position:
    • 627701
  • centisome-position:
    • 55.26933

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CHOLANATE2&oldid=34204"