Difference between revisions of "CHORISMATEMUT-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DATCY DATCY] == * direction: ** left-to-right * common-name: ** datp:cytidine 5'-phosphotransferase...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] == * direction: ** left-to-right * common-name: ** orotidine-5'-ph...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DATCY DATCY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** datp:cytidine 5'-phosphotransferase
+
** orotidine-5'-phosphate decarboxylase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.1.23 ec-4.1.1.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CYTIDINE]][c] '''+''' 1.0 [[DATP]][c] '''=>''' 1.0 [[CMP]][c] '''+''' 1.0 [[DADP]][c] '''+''' 1.0 [[PROTON]][c]
+
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02034]]
+
* Gene: [[SJ02816]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15690]]
+
* Gene: [[SJ02815]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11597 11597]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11172 P11172]
 +
** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
 +
** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
 +
** [http://www.uniprot.org/uniprot/P24220 P24220]
 +
** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
 +
** [http://www.uniprot.org/uniprot/P43812 P43812]
 +
** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
 +
** [http://www.uniprot.org/uniprot/P10652 P10652]
 +
** [http://www.uniprot.org/uniprot/P07817 P07817]
 +
** [http://www.uniprot.org/uniprot/P03962 P03962]
 +
** [http://www.uniprot.org/uniprot/P14017 P14017]
 +
** [http://www.uniprot.org/uniprot/P07691 P07691]
 +
** [http://www.uniprot.org/uniprot/P08244 P08244]
 +
** [http://www.uniprot.org/uniprot/P13439 P13439]
 +
** [http://www.uniprot.org/uniprot/P05035 P05035]
 +
** [http://www.uniprot.org/uniprot/P09463 P09463]
 +
** [http://www.uniprot.org/uniprot/P14964 P14964]
 +
** [http://www.uniprot.org/uniprot/P21593 P21593]
 +
** [http://www.uniprot.org/uniprot/P15188 P15188]
 +
** [http://www.uniprot.org/uniprot/P07922 P07922]
 +
** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
 +
** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
 +
** [http://www.uniprot.org/uniprot/P25971 P25971]
 +
** [http://www.uniprot.org/uniprot/P46535 P46535]
 +
** [http://www.uniprot.org/uniprot/P31754 P31754]
 +
** [http://www.uniprot.org/uniprot/P32430 P32430]
 +
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 +
** [http://www.uniprot.org/uniprot/P09556 P09556]
 +
** [http://www.uniprot.org/uniprot/P21594 P21594]
 +
** [http://www.uniprot.org/uniprot/Q06375 Q06375]
 +
** [http://www.uniprot.org/uniprot/P41769 P41769]
 +
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 +
** [http://www.uniprot.org/uniprot/Q59654 Q59654]
 +
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 +
** [http://www.uniprot.org/uniprot/P48844 P48844]
 +
** [http://www.uniprot.org/uniprot/P43230 P43230]
 +
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 +
** [http://www.uniprot.org/uniprot/O74110 O74110]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=datp:cytidine 5'-phosphotransferase}}
+
{{#set: common-name=orotidine-5'-phosphate decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.23}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction OROTPDECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • orotidine-5'-phosphate decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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