Difference between revisions of "CHORISMATEMUT-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] == * direction: ** left-to-right * common-name: ** orotidine-5'-ph...")
(Created page with "Category:reaction == Reaction CARBODEHYDRAT-RXN == * direction: ** reversible * common-name: ** carbonate dehydratase ** carbonic anhydrase * ec-number: ** [http://enzyme....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] ==
+
== Reaction CARBODEHYDRAT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** orotidine-5'-phosphate decarboxylase
+
** carbonate dehydratase
 +
** carbonic anhydrase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.23 ec-4.1.1.23]
+
** [http://enzyme.expasy.org/EC/4.2.1.1 ec-4.2.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c]
+
* 1 [[H2CO3]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02816]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ07324]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17783]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18142]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13238]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12311]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07587]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18135]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13240]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18140]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02815]]
+
* Gene: [[SJ07765]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07762]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21158]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22175]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18141]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11597 11597]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00132 R00132]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11172 P11172]
+
** [http://www.uniprot.org/uniprot/P07450 P07450]
−
** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
+
** [http://www.uniprot.org/uniprot/P07452 P07452]
−
** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
+
** [http://www.uniprot.org/uniprot/P13634 P13634]
−
** [http://www.uniprot.org/uniprot/P24220 P24220]
+
** [http://www.uniprot.org/uniprot/P08060 P08060]
−
** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
+
** [http://www.uniprot.org/uniprot/P16016 P16016]
−
** [http://www.uniprot.org/uniprot/P43812 P43812]
+
** [http://www.uniprot.org/uniprot/P20507 P20507]
−
** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
+
** [http://www.uniprot.org/uniprot/P16015 P16015]
−
** [http://www.uniprot.org/uniprot/P10652 P10652]
+
** [http://www.uniprot.org/uniprot/P40881 P40881]
−
** [http://www.uniprot.org/uniprot/P07817 P07817]
+
** [http://www.uniprot.org/uniprot/Q7LZP1 Q7LZP1]
−
** [http://www.uniprot.org/uniprot/P03962 P03962]
+
** [http://www.uniprot.org/uniprot/Q8X938 Q8X938]
−
** [http://www.uniprot.org/uniprot/P14017 P14017]
+
** [http://www.uniprot.org/uniprot/P00921 P00921]
−
** [http://www.uniprot.org/uniprot/P07691 P07691]
+
** [http://www.uniprot.org/uniprot/P00917 P00917]
−
** [http://www.uniprot.org/uniprot/P08244 P08244]
+
** [http://www.uniprot.org/uniprot/P00915 P00915]
−
** [http://www.uniprot.org/uniprot/P13439 P13439]
+
** [http://www.uniprot.org/uniprot/P00918 P00918]
−
** [http://www.uniprot.org/uniprot/P05035 P05035]
+
** [http://www.uniprot.org/uniprot/P07451 P07451]
−
** [http://www.uniprot.org/uniprot/P09463 P09463]
+
** [http://www.uniprot.org/uniprot/P22748 P22748]
−
** [http://www.uniprot.org/uniprot/P14964 P14964]
+
** [http://www.uniprot.org/uniprot/P35218 P35218]
−
** [http://www.uniprot.org/uniprot/P21593 P21593]
+
** [http://www.uniprot.org/uniprot/P43166 P43166]
−
** [http://www.uniprot.org/uniprot/P15188 P15188]
+
** [http://www.uniprot.org/uniprot/P00916 P00916]
−
** [http://www.uniprot.org/uniprot/P07922 P07922]
+
** [http://www.uniprot.org/uniprot/P00920 P00920]
−
** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
+
** [http://www.uniprot.org/uniprot/P00922 P00922]
−
** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
+
** [http://www.uniprot.org/uniprot/O24855 O24855]
−
** [http://www.uniprot.org/uniprot/P25971 P25971]
+
** [http://www.uniprot.org/uniprot/Q9PIQ7 Q9PIQ7]
−
** [http://www.uniprot.org/uniprot/P46535 P46535]
+
** [http://www.uniprot.org/uniprot/P14141 P14141]
−
** [http://www.uniprot.org/uniprot/P31754 P31754]
+
** [http://www.uniprot.org/uniprot/P43165 P43165]
−
** [http://www.uniprot.org/uniprot/P32430 P32430]
+
** [http://www.uniprot.org/uniprot/P07630 P07630]
−
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
+
** [http://www.uniprot.org/uniprot/P27139 P27139]
−
** [http://www.uniprot.org/uniprot/P09556 P09556]
+
** [http://www.uniprot.org/uniprot/P35219 P35219]
−
** [http://www.uniprot.org/uniprot/P21594 P21594]
+
** [http://www.uniprot.org/uniprot/Q7M317 Q7M317]
−
** [http://www.uniprot.org/uniprot/Q06375 Q06375]
+
** [http://www.uniprot.org/uniprot/Q7M316 Q7M316]
−
** [http://www.uniprot.org/uniprot/P41769 P41769]
+
** [http://www.uniprot.org/uniprot/P0ABE9 P0ABE9]
−
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
+
** [http://www.uniprot.org/uniprot/P18761 P18761]
−
** [http://www.uniprot.org/uniprot/Q59654 Q59654]
+
** [http://www.uniprot.org/uniprot/P17067 P17067]
−
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
+
** [http://www.uniprot.org/uniprot/P23589 P23589]
−
** [http://www.uniprot.org/uniprot/P48844 P48844]
+
** [http://www.uniprot.org/uniprot/P24258 P24258]
−
** [http://www.uniprot.org/uniprot/P43230 P43230]
+
** [http://www.uniprot.org/uniprot/P27140 P27140]
−
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
+
** [http://www.uniprot.org/uniprot/P27134 P27134]
−
** [http://www.uniprot.org/uniprot/O74110 O74110]
+
** [http://www.uniprot.org/uniprot/P46510 P46510]
 +
** [http://www.uniprot.org/uniprot/P46511 P46511]
 +
** [http://www.uniprot.org/uniprot/P46512 P46512]
 +
** [http://www.uniprot.org/uniprot/P46281 P46281]
 +
** [http://www.uniprot.org/uniprot/P18915 P18915]
 +
** [http://www.uniprot.org/uniprot/Q41728 Q41728]
 +
** [http://www.uniprot.org/uniprot/Q41729 Q41729]
 +
** [http://www.uniprot.org/uniprot/P27141 P27141]
 +
** [http://www.uniprot.org/uniprot/Q40628 Q40628]
 +
** [http://www.uniprot.org/uniprot/Q08056 Q08056]
 +
** [http://www.uniprot.org/uniprot/P40880 P40880]
 +
** [http://www.uniprot.org/uniprot/Q39588 Q39588]
 +
** [http://www.uniprot.org/uniprot/P93108 P93108]
 +
** [http://www.uniprot.org/uniprot/Q92051 Q92051]
 +
** [http://www.uniprot.org/uniprot/O04855 O04855]
 +
** [http://www.uniprot.org/uniprot/Q41088 Q41088]
 +
** [http://www.uniprot.org/uniprot/Q41089 Q41089]
 +
** [http://www.uniprot.org/uniprot/P46513 P46513]
 +
** [http://www.uniprot.org/uniprot/O04846 O04846]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=orotidine-5'-phosphate decarboxylase}}
+
{{#set: common-name=carbonic anhydrase|carbonate dehydratase}}
−
{{#set: ec-number=ec-4.1.1.23}}
+
{{#set: ec-number=ec-4.2.1.1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=14}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}

Revision as of 20:39, 18 December 2020

Reaction CARBODEHYDRAT-RXN

  • direction:
    • reversible
  • common-name:
    • carbonate dehydratase
    • carbonic anhydrase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CHORISMATEMUT-RXN&oldid=49305"