Difference between revisions of "CHORISMATEMUT-RXN"

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(Created page with "Category:reaction == Reaction CARBODEHYDRAT-RXN == * direction: ** reversible * common-name: ** carbonate dehydratase ** carbonic anhydrase * ec-number: ** [http://enzyme....")
(Created page with "Category:reaction == Reaction CYSTATHIONASE-RXN == * direction: ** reversible == Reaction formula == * 1 L-CYSTATHIONINE[c] '''+''' 1 WATER[c] '''<=>''' 1 CYS[...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CARBODEHYDRAT-RXN ==
+
== Reaction CYSTATHIONASE-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
 
−
** carbonate dehydratase
 
−
** carbonic anhydrase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.2.1.1 ec-4.2.1.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[H2CO3]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CYS]][c] '''+''' 1 [[HOMO-SER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[SJ07324]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17783]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18142]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13238]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12311]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07587]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18135]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13240]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18140]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07765]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07762]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21158]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ22175]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18141]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00132 R00132]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P07450 P07450]
 
−
** [http://www.uniprot.org/uniprot/P07452 P07452]
 
−
** [http://www.uniprot.org/uniprot/P13634 P13634]
 
−
** [http://www.uniprot.org/uniprot/P08060 P08060]
 
−
** [http://www.uniprot.org/uniprot/P16016 P16016]
 
−
** [http://www.uniprot.org/uniprot/P20507 P20507]
 
−
** [http://www.uniprot.org/uniprot/P16015 P16015]
 
−
** [http://www.uniprot.org/uniprot/P40881 P40881]
 
−
** [http://www.uniprot.org/uniprot/Q7LZP1 Q7LZP1]
 
−
** [http://www.uniprot.org/uniprot/Q8X938 Q8X938]
 
−
** [http://www.uniprot.org/uniprot/P00921 P00921]
 
−
** [http://www.uniprot.org/uniprot/P00917 P00917]
 
−
** [http://www.uniprot.org/uniprot/P00915 P00915]
 
−
** [http://www.uniprot.org/uniprot/P00918 P00918]
 
−
** [http://www.uniprot.org/uniprot/P07451 P07451]
 
−
** [http://www.uniprot.org/uniprot/P22748 P22748]
 
−
** [http://www.uniprot.org/uniprot/P35218 P35218]
 
−
** [http://www.uniprot.org/uniprot/P43166 P43166]
 
−
** [http://www.uniprot.org/uniprot/P00916 P00916]
 
−
** [http://www.uniprot.org/uniprot/P00920 P00920]
 
−
** [http://www.uniprot.org/uniprot/P00922 P00922]
 
−
** [http://www.uniprot.org/uniprot/O24855 O24855]
 
−
** [http://www.uniprot.org/uniprot/Q9PIQ7 Q9PIQ7]
 
−
** [http://www.uniprot.org/uniprot/P14141 P14141]
 
−
** [http://www.uniprot.org/uniprot/P43165 P43165]
 
−
** [http://www.uniprot.org/uniprot/P07630 P07630]
 
−
** [http://www.uniprot.org/uniprot/P27139 P27139]
 
−
** [http://www.uniprot.org/uniprot/P35219 P35219]
 
−
** [http://www.uniprot.org/uniprot/Q7M317 Q7M317]
 
−
** [http://www.uniprot.org/uniprot/Q7M316 Q7M316]
 
−
** [http://www.uniprot.org/uniprot/P0ABE9 P0ABE9]
 
−
** [http://www.uniprot.org/uniprot/P18761 P18761]
 
−
** [http://www.uniprot.org/uniprot/P17067 P17067]
 
−
** [http://www.uniprot.org/uniprot/P23589 P23589]
 
−
** [http://www.uniprot.org/uniprot/P24258 P24258]
 
−
** [http://www.uniprot.org/uniprot/P27140 P27140]
 
−
** [http://www.uniprot.org/uniprot/P27134 P27134]
 
−
** [http://www.uniprot.org/uniprot/P46510 P46510]
 
−
** [http://www.uniprot.org/uniprot/P46511 P46511]
 
−
** [http://www.uniprot.org/uniprot/P46512 P46512]
 
−
** [http://www.uniprot.org/uniprot/P46281 P46281]
 
−
** [http://www.uniprot.org/uniprot/P18915 P18915]
 
−
** [http://www.uniprot.org/uniprot/Q41728 Q41728]
 
−
** [http://www.uniprot.org/uniprot/Q41729 Q41729]
 
−
** [http://www.uniprot.org/uniprot/P27141 P27141]
 
−
** [http://www.uniprot.org/uniprot/Q40628 Q40628]
 
−
** [http://www.uniprot.org/uniprot/Q08056 Q08056]
 
−
** [http://www.uniprot.org/uniprot/P40880 P40880]
 
−
** [http://www.uniprot.org/uniprot/Q39588 Q39588]
 
−
** [http://www.uniprot.org/uniprot/P93108 P93108]
 
−
** [http://www.uniprot.org/uniprot/Q92051 Q92051]
 
−
** [http://www.uniprot.org/uniprot/O04855 O04855]
 
−
** [http://www.uniprot.org/uniprot/Q41088 Q41088]
 
−
** [http://www.uniprot.org/uniprot/Q41089 Q41089]
 
−
** [http://www.uniprot.org/uniprot/P46513 P46513]
 
−
** [http://www.uniprot.org/uniprot/O04846 O04846]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=carbonic anhydrase|carbonate dehydratase}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-4.2.1.1}}
 
−
{{#set: nb gene associated=14}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 15:01, 5 January 2021

Reaction CYSTATHIONASE-RXN

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CHORISMATEMUT-RXN&oldid=62331"