Difference between revisions of "CHORISMATEMUT-RXN"

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(Created page with "Category:reaction == Reaction CYSTATHIONASE-RXN == * direction: ** reversible == Reaction formula == * 1 L-CYSTATHIONINE[c] '''+''' 1 WATER[c] '''<=>''' 1 CYS[...")
(Created page with "Category:reaction == Reaction DTDPDEHYDRHAMEPIM-RXN == * direction: ** left-to-right * common-name: ** dtdp-4-dehydrorhamnose 3,5-epimerase * ec-number: ** [http://enzyme....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CYSTATHIONASE-RXN ==
+
== Reaction DTDPDEHYDRHAMEPIM-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** dtdp-4-dehydrorhamnose 3,5-epimerase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/5.1.3.13 ec-5.1.3.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CYS]][c] '''+''' 1 [[HOMO-SER]][c]
+
* 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-MANNOSE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ22556]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
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* RHEA:
−
{{#set: nb gene associated=0}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16969 16969]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=gap-filling}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R06514 R06514]
−
{{#set: reconstruction tool=meneco}}
+
* UNIPROT:
−
{{#set: reconstruction comment=added for gapfilling}}
+
** [http://www.uniprot.org/uniprot/Q9JWX1 Q9JWX1]
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
** [http://www.uniprot.org/uniprot/Q9JWW7 Q9JWW7]
 +
** [http://www.uniprot.org/uniprot/Q9UZG9 Q9UZG9]
 +
** [http://www.uniprot.org/uniprot/P37745 P37745]
 +
** [http://www.uniprot.org/uniprot/Q7M0V5 Q7M0V5]
 +
** [http://www.uniprot.org/uniprot/P37763 P37763]
 +
** [http://www.uniprot.org/uniprot/Q46770 Q46770]
 +
** [http://www.uniprot.org/uniprot/P29783 P29783]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=dtdp-4-dehydrorhamnose 3,5-epimerase}}
 +
{{#set: ec-number=ec-5.1.3.13}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:32, 5 January 2021

Reaction DTDPDEHYDRHAMEPIM-RXN

  • direction:
    • left-to-right
  • common-name:
    • dtdp-4-dehydrorhamnose 3,5-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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