Difference between revisions of "COPROPORPHYRIN III"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALDEHYDE-DEHYDROGENASE-NADP+-RXN ALDEHYDE-DEHYDROGENASE-NADP+-RXN] == * direction: ** left-to-right...")
(Created page with "Category:gene == Gene SJ15388 == * transcription-direction: ** positive * right-end-position: ** 482236 * left-end-position: ** 467092 * centisome-position: ** 66.27816...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALDEHYDE-DEHYDROGENASE-NADP+-RXN ALDEHYDE-DEHYDROGENASE-NADP+-RXN] ==
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== Gene SJ15388 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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* common-name:
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* right-end-position:
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** aldehyde dehydrogenase [nad(p)+]
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** 482236
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/1.2.1.4 ec-1.2.1.4]
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** 467092
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== Reaction formula ==
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* centisome-position:
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* 1 [[Aldehydes]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Carboxylates]][c] '''+''' 1 [[NADPH]][c] '''+''' 2 [[PROTON]][c]
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** 66.27816   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[SJ06456]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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* [[TRIOSEPISOMERIZATION-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* Gene: [[SJ06470]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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** Category: [[annotation]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) associated ==
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== Pathway(s) ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-7269]], NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7269 PWY-7269]
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* [[GLUCONEO-PWY]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** '''12''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* [[CALVIN-PWY]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''12''' reactions found over '''13''' reactions in the full pathway
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[P185-PWY]]
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== External links  ==
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* RHEA:
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* [[PWY-5484]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11888 11888]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* LIGAND-RXN:
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* [[PWY-1042]]
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** [http://www.genome.jp/dbget-bin/www_bget?R00634 R00634]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* UNIPROT:
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* [[P341-PWY]]
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** [http://www.uniprot.org/uniprot/P11883 P11883]
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** '''6''' reactions found over '''10''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q8TBP8 Q8TBP8]
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* [[GLYCOLYSIS]]
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{{#set: direction=left-to-right}}
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** '''11''' reactions found over '''12''' reactions in the full pathway
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{{#set: common-name=aldehyde dehydrogenase [nad(p)+]}}
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* [[ANAGLYCOLYSIS-PWY]]
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{{#set: ec-number=ec-1.2.1.4}}
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** '''10''' reactions found over '''11''' reactions in the full pathway
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{{#set: nb gene associated=2}}
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* [[PWY66-399]]
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{{#set: nb pathway associated=1}}
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** '''11''' reactions found over '''12''' reactions in the full pathway
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{{#set: reconstruction category=orthology|annotation}}
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* [[PWY-6142]]
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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** '''10''' reactions found over '''13''' reactions in the full pathway
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{{#set: reconstruction comment=n.a}}
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* [[PWY66-373]]
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7003]]
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** '''8''' reactions found over '''6''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=482236}}
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{{#set: left-end-position=467092}}
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{{#set: centisome-position=66.27816    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=1}}
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{{#set: nb pathway associated=12}}

Revision as of 09:28, 27 August 2019

Gene SJ15388

  • transcription-direction:
    • positive
  • right-end-position:
    • 482236
  • left-end-position:
    • 467092
  • centisome-position:
    • 66.27816

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY66-373
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7003
    • 8 reactions found over 6 reactions in the full pathway




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