Difference between revisions of "CPD-10420"

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(Created page with "Category:gene == Gene SJ06513 == * transcription-direction: ** positive * right-end-position: ** 63788 * left-end-position: ** 53596 * centisome-position: ** 68.32303...")
(Created page with "Category:metabolite == Metabolite PROTOPORPHYRIN_IX == * common-name: ** protoporphyrin ix * smiles: ** c=cc1(c(c)=c2(c=c5(c(c)=c(ccc([o-])=o)c(c=c4(c(ccc([o-])=o)=c(c)c(=...")
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[[Category:gene]]
+
[[Category:metabolite]]
== Gene SJ06513 ==
+
== Metabolite PROTOPORPHYRIN_IX ==
* transcription-direction:
+
* common-name:
** positive
+
** protoporphyrin ix
* right-end-position:
+
* smiles:
** 63788
+
** c=cc1(c(c)=c2(c=c5(c(c)=c(ccc([o-])=o)c(c=c4(c(ccc([o-])=o)=c(c)c(=cc3(c(c=c)=c(c)c(=cc=1n2)n=3))n4))=n5)))
* left-end-position:
+
* inchi-key:
** 53596
+
** ksfovussgskxfi-ujjxfscmsa-l
* centisome-position:
+
* molecular-weight:
** 68.32303   
+
** 560.651
== Organism(s) associated with this gene  ==
+
== Reaction(s) known to consume the compound ==
* [[S.japonica_carotenoid_curated]]
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* [[PROTOHEMEFERROCHELAT-RXN]]
== Reaction(s) associated ==
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* [[RXN1F-20]]
* [[3.2.1.8-RXN]]
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== Reaction(s) known to produce the compound ==
** Category: [[annotation]]
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* [[PPPGO]]
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PROTOHEMEFERROCHELAT-RXN]]
** Category: [[orthology]]
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* [[PROTOPORGENOXI-RXN]]
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
== Reaction(s) of unknown directionality ==
* [[3.2.1.91-RXN]]
+
{{#set: common-name=protoporphyrin ix}}
** Category: [[annotation]]
+
{{#set: inchi-key=inchikey=ksfovussgskxfi-ujjxfscmsa-l}}
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: molecular-weight=560.651}}
* [[RXN-12305]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== Pathway(s) associated ==
 
* [[PWY-6784]]
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-6788]]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
{{#set: transcription-direction=positive}}
 
{{#set: right-end-position=63788}}
 
{{#set: left-end-position=53596}}
 
{{#set: centisome-position=68.32303    }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=3}}
 
{{#set: nb pathway associated=2}}
 

Revision as of 20:31, 18 December 2020

Metabolite PROTOPORPHYRIN_IX

  • common-name:
    • protoporphyrin ix
  • smiles:
    • c=cc1(c(c)=c2(c=c5(c(c)=c(ccc([o-])=o)c(c=c4(c(ccc([o-])=o)=c(c)c(=cc3(c(c=c)=c(c)c(=cc=1n2)n=3))n4))=n5)))
  • inchi-key:
    • ksfovussgskxfi-ujjxfscmsa-l
  • molecular-weight:
    • 560.651

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality