Difference between revisions of "CPD-10792"

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(Created page with "== description == == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == Model summary: summary Download '''AuReMe''' Input/Output [LI...")
(Created page with "Category:metabolite == Metabolite CPD-10792 == * common-name: ** 2-amino-3,7-dideoxy-d-threo-hept-6-ulosonate * smiles: ** cc(=o)c(o)c(o)cc([n+])c([o-])=o * inchi-key: **...")
 
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==  description ==
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[[Category:metabolite]]
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Metabolite CPD-10792 ==
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Model summary: [[MEDIA:summary.txt|summary]]
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* common-name:
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** 2-amino-3,7-dideoxy-d-threo-hept-6-ulosonate
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Download '''AuReMe''' Input/Output [LINK OR MEDIA data]
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* smiles:
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** cc(=o)c(o)c(o)cc([n+])c([o-])=o
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The automatic reconstruction of ''MODEL_NAME'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 3356 reactions, 3250 metabolites, 5018 genes and 1391 pathways. This GeM was obtained based on the following sources:
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* inchi-key:
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* Based on orthology data:
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** ifmhgoadxgywmo-kvqbguixsa-n
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** Creation of a global metabolic network containing 1879 reactions
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* molecular-weight:
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*** From template ''ectocarpus_siliculosus'' creation of a metabolic network containing: 1492 reactions
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** 191.183
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*** From template ''arabidopsis_thaliana'' creation of a metabolic network containing: 419 reactions
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== Reaction(s) known to consume the compound ==
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*** From template ''nannochloropsis_salina'' creation of a metabolic network containing: 589 reactions
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* [[RXN-10032]]
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* Based on annotation data:
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== Reaction(s) known to produce the compound ==
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** Creation of a metabolic network containing 2552 reactions
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== Reaction(s) of unknown directionality ==
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* Based on expertise:
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{{#set: common-name=2-amino-3,7-dideoxy-d-threo-hept-6-ulosonate}}
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** 101 reaction(s) added
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{{#set: inchi-key=inchikey=ifmhgoadxgywmo-kvqbguixsa-n}}
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* Based on gap-filling:
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{{#set: molecular-weight=191.183}}
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*** 90 reaction(s) added
 
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*List of tools used:
 
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** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
 
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** Tool: [http://bioinformatics.ai.sri.com/ptools/ PathwayTools]
 
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** Tool: [https://pypi.python.org/pypi/meneco Meneco]
 
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[[FILE:venn.png|frameless|border]]
 
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== Collaborative curation ==  
 
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* Suggest reactions to add or remove:
 
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
 
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* Suggest new reactions to create and add:
 
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** Download this [[MEDIA:Reaction_creator.csv|form]]
 
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
 
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* Send the filled form(s) to: CONTACT_MAIL
 

Latest revision as of 11:18, 18 March 2021

Metabolite CPD-10792

  • common-name:
    • 2-amino-3,7-dideoxy-d-threo-hept-6-ulosonate
  • smiles:
    • cc(=o)c(o)c(o)cc([n+])c([o-])=o
  • inchi-key:
    • ifmhgoadxgywmo-kvqbguixsa-n
  • molecular-weight:
    • 191.183

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-10792&oldid=139854"