Difference between revisions of "CPD-12018"

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(Created page with "Category:gene == Gene SJ09995 == * transcription-direction: ** positive * right-end-position: ** 320512 * left-end-position: ** 313564 * centisome-position: ** 78.44709...")
(Created page with "Category:gene == Gene SJ03195 == * transcription-direction: ** negative * right-end-position: ** 113649 * left-end-position: ** 109177 * centisome-position: ** 88.05378...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ09995 ==
+
== Gene SJ03195 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 320512
+
** 113649
 
* left-end-position:
 
* left-end-position:
−
** 313564
+
** 109177
 
* centisome-position:
 
* centisome-position:
−
** 78.44709    
+
** 88.05378    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[2.5.1.46-RXN]]
+
* [[ADENPHOSPHOR-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[DEOXYADENPHOSPHOR-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[DEOXYGUANPHOSPHOR-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[DEOXYINOPHOSPHOR-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[INOPHOSPHOR-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[M5TAP]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-13414]]
+
* [[PNP-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11715]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11743]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14029]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7001]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-5199]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[URA-PHOSPH-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13415]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[URPHOS-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13416]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[XANTHOSINEPHOSPHORY-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13417]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-5905]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-5532]]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY0-1296]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[P121-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6609]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6611]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7179]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7179-1]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[SALVADEHYPOX-PWY]]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[PWY-6627]]
−
{{#set: right-end-position=320512}}
+
** '''3''' reactions found over '''15''' reactions in the full pathway
−
{{#set: left-end-position=313564}}
+
* [[PWY-6644]]
−
{{#set: centisome-position=78.44709   }}
+
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-4202]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6608]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6620]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7181]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-1295]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5695]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[SALVPURINE2-PWY]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=113649}}
 +
{{#set: left-end-position=109177}}
 +
{{#set: centisome-position=88.05378   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=15}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=17}}

Revision as of 09:28, 27 August 2019

Gene SJ03195

  • transcription-direction:
    • negative
  • right-end-position:
    • 113649
  • left-end-position:
    • 109177
  • centisome-position:
    • 88.05378

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5532
    • 4 reactions found over 10 reactions in the full pathway
  • PWY0-1296
    • 6 reactions found over 6 reactions in the full pathway
  • P121-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6609
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6611
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7179
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7179-1
    • 3 reactions found over 3 reactions in the full pathway
  • SALVADEHYPOX-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6627
    • 3 reactions found over 15 reactions in the full pathway
  • PWY-6644
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-4202
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6608
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6620
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7181
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1295
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5695
    • 4 reactions found over 4 reactions in the full pathway
  • SALVPURINE2-PWY
    • 1 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-12018&oldid=33295"