Difference between revisions of "CPD-12126"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11637 RXN-11637] == * direction: ** left-to-right * common-name: ** 16s rrna 2'-o-ribose c1402...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2PGADEHYDRAT-RXN 2PGADEHYDRAT-RXN] == * direction: ** reversible * common-name: ** enolase * ec-num...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11637 RXN-11637] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2PGADEHYDRAT-RXN 2PGADEHYDRAT-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 16s rrna 2'-o-ribose c1402 methyltransferase
+
** enolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.198 ec-2.1.1.198]
+
** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[16S-rRNA-cytidine1402]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[16S-rRNA-2-O-methylcytidine1402]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[2-PG]][c] '''<=>''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21420]]
+
* Gene: [[SJ08386]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13450]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 +
** '''8''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
 +
** '''7''' reactions found over '''4''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42925 42925]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10167 10167]
−
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
−
{{#set: common-name=16s rrna 2'-o-ribose c1402 methyltransferase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00658 R00658]
−
{{#set: ec-number=ec-2.1.1.198}}
+
* UNIPROT:
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/P04764 P04764]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/P07322 P07322]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P07323 P07323]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P06733 P06733]
 +
** [http://www.uniprot.org/uniprot/P19140 P19140]
 +
** [http://www.uniprot.org/uniprot/P25704 P25704]
 +
** [http://www.uniprot.org/uniprot/P30575 P30575]
 +
** [http://www.uniprot.org/uniprot/P33675 P33675]
 +
** [http://www.uniprot.org/uniprot/P47647 P47647]
 +
** [http://www.uniprot.org/uniprot/Q9JU46 Q9JU46]
 +
** [http://www.uniprot.org/uniprot/P37869 P37869]
 +
** [http://www.uniprot.org/uniprot/Q9URB2 Q9URB2]
 +
** [http://www.uniprot.org/uniprot/Q9CIT0 Q9CIT0]
 +
** [http://www.uniprot.org/uniprot/Q9CHS7 Q9CHS7]
 +
** [http://www.uniprot.org/uniprot/P43806 P43806]
 +
** [http://www.uniprot.org/uniprot/P42448 P42448]
 +
** [http://www.uniprot.org/uniprot/P42848 P42848]
 +
** [http://www.uniprot.org/uniprot/Q05524 Q05524]
 +
** [http://www.uniprot.org/uniprot/P42897 P42897]
 +
** [http://www.uniprot.org/uniprot/P40370 P40370]
 +
** [http://www.uniprot.org/uniprot/P51913 P51913]
 +
** [http://www.uniprot.org/uniprot/P26300 P26300]
 +
** [http://www.uniprot.org/uniprot/Q42887 Q42887]
 +
** [http://www.uniprot.org/uniprot/P25696 P25696]
 +
** [http://www.uniprot.org/uniprot/P00924 P00924]
 +
** [http://www.uniprot.org/uniprot/P00925 P00925]
 +
** [http://www.uniprot.org/uniprot/P0A6P9 P0A6P9]
 +
** [http://www.uniprot.org/uniprot/P29201 P29201]
 +
** [http://www.uniprot.org/uniprot/P09104 P09104]
 +
** [http://www.uniprot.org/uniprot/P21550 P21550]
 +
** [http://www.uniprot.org/uniprot/P08734 P08734]
 +
** [http://www.uniprot.org/uniprot/Q7M4Y6 Q7M4Y6]
 +
** [http://www.uniprot.org/uniprot/P15429 P15429]
 +
** [http://www.uniprot.org/uniprot/P13929 P13929]
 +
** [http://www.uniprot.org/uniprot/P15007 P15007]
 +
** [http://www.uniprot.org/uniprot/P17182 P17182]
 +
** [http://www.uniprot.org/uniprot/P17183 P17183]
 +
** [http://www.uniprot.org/uniprot/P26301 P26301]
 +
** [http://www.uniprot.org/uniprot/P31683 P31683]
 +
** [http://www.uniprot.org/uniprot/Q54274 Q54274]
 +
** [http://www.uniprot.org/uniprot/P42896 P42896]
 +
** [http://www.uniprot.org/uniprot/Q27727 Q27727]
 +
** [http://www.uniprot.org/uniprot/Q9UWJ5 Q9UWJ5]
 +
** [http://www.uniprot.org/uniprot/P48285 P48285]
 +
** [http://www.uniprot.org/uniprot/Q12007 Q12007]
 +
** [http://www.uniprot.org/uniprot/P42222 P42222]
 +
** [http://www.uniprot.org/uniprot/P75189 P75189]
 +
** [http://www.uniprot.org/uniprot/P77972 P77972]
 +
** [http://www.uniprot.org/uniprot/Q49059 Q49059]
 +
** [http://www.uniprot.org/uniprot/P42895 P42895]
 +
** [http://www.uniprot.org/uniprot/Q42971 Q42971]
 +
** [http://www.uniprot.org/uniprot/Q43130 Q43130]
 +
** [http://www.uniprot.org/uniprot/O69174 O69174]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=enolase}}
 +
{{#set: ec-number=ec-4.2.1.11}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=19}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}

Revision as of 09:29, 27 August 2019

Reaction 2PGADEHYDRAT-RXN

  • direction:
    • reversible
  • common-name:
    • enolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
    • 6 reactions found over 9 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative): NPGLUCAT-PWY
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway): PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 8 reactions found over 6 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
    • 8 reactions found over 5 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
    • 7 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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