Difference between revisions of "CPD-12258"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2145 RXN0-2145] == * direction: ** left-to-right * common-name: ** cis-δ5-dodecenoyl-[ac...")
(Created page with "Category:metabolite == Metabolite CPD-12258 == * common-name: ** udp-n-acetyl-α-d-muramoyl-l-alanyl-γ-d-glutamyl-l-lysyl-d-alanine * smiles: ** cc(c(=o)nc(c(=o...")
 
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2145 RXN0-2145] ==
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== Metabolite CPD-12258 ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** cis-δ5-dodecenoyl-[acp]:nad+ oxidoreductase
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** udp-n-acetyl-α-d-muramoyl-l-alanyl-γ-d-glutamyl-l-lysyl-d-alanine
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/1.3.1.9 ec-1.3.1.9]
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** cc(c(=o)nc(c(=o)[o-])ccc(=o)nc(cccc[n+])c(nc(c)c(=o)[o-])=o)nc(=o)c(c)oc1(c(o)c(co)oc(c(nc(=o)c)1)op(op(occ2(oc(c(o)c(o)2)n3(c=cc(=o)nc(=o)3)))([o-])=o)([o-])=o)
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== Reaction formula ==
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* inchi-key:
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* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Trans-D3-cis-D5-dodecenoyl-ACPs]][c] '''=>''' 1 [[Cis-Delta5-dodecenoyl-ACPs]][c] '''+''' 1 [[NAD]][c]
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** foedsvrzgqixsp-xsoiktqosa-k
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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* Gene: [[SJ03883]]
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** 1075.843
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** Category: [[annotation]]
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== Reaction(s) known to consume the compound ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-11347]]
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** Category: [[orthology]]
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== Reaction(s) known to produce the compound ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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* Gene: [[SJ00320]]
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{{#set: common-name=udp-n-acetyl-α-d-muramoyl-l-alanyl-γ-d-glutamyl-l-lysyl-d-alanine}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=foedsvrzgqixsp-xsoiktqosa-k}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: molecular-weight=1075.843}}
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== Pathway(s) ==
 
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* [[PWY-7858]], (5Z)-dodecenoate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7858 PWY-7858]
 
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** '''4''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY0-862]], (5Z)-dodecenoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
 
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** '''5''' reactions found over '''6''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=cis-δ5-dodecenoyl-[acp]:nad+ oxidoreductase}}
 
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{{#set: ec-number=ec-1.3.1.9}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite CPD-12258

  • common-name:
    • udp-n-acetyl-α-d-muramoyl-l-alanyl-γ-d-glutamyl-l-lysyl-d-alanine
  • smiles:
    • cc(c(=o)nc(c(=o)[o-])ccc(=o)nc(cccc[n+])c(nc(c)c(=o)[o-])=o)nc(=o)c(c)oc1(c(o)c(co)oc(c(nc(=o)c)1)op(op(occ2(oc(c(o)c(o)2)n3(c=cc(=o)nc(=o)3)))([o-])=o)([o-])=o)
  • inchi-key:
    • foedsvrzgqixsp-xsoiktqosa-k
  • molecular-weight:
    • 1075.843

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-12258&oldid=138561"